Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1033 ATGACCATTTTCAGGGAGACTCGTGCTCCTACCATTCTCTCTCTCTGCATTTCTGATCATGGCCTTCCTTCCCTTTCTCTCTTACTTCTTCTCCTACACACCCTACCCCCATCCTCTGCGCAGCTCCCAAATATTCCCTCCCCTCCCCCACCCGACCCATTCTCCAGGTTCCGATTCGATAAAACCATGGCCATCATTTTGGTCGTCCTCGTCCTTGTCTTCTTTGTCTTAGGCTTTCTCTCTGTCTACTCTCGCCGATGTGCGGAGCGACGAATCCGAGGTACACTTGACCCCAATAACCCAAACGGAAGCAGCCGCGGTCACCCGCGCGGTCTCGACCCGGAGATCATCCACACCTTTCCCACTTTCGTCTACTCCACCGTGAAGGGCCTCAAGATTGGGAAGAGCACGCTAGAATGCGCCGTCTGCATAAATGAATTTCAAGACGACGAAACACTGCGGTTCATCCCTAAATGCAGTCACGTCTTCCATCCTGACTGTATCGACCTCTGGTTGTCCTCTCACTCTACCTGCCCGGTTTGCCGGGCCAACCTCGTCCCGAGACCCGGAGATGTGTCCTTCGTCGCCATTCAGATACCGGATGCTGCTTTGGAACCCGACAGATTATCCGATTCCGATGACCAACAGAACAGGGATATCATCCAACTTGATGACAATGGGAACAGAGTAGCAGGGTCTCCGAAGGTAAATTTACTGAGCCGGAGTAAGACAACGAGGTCAGGGTCAACGGGGTTTCGGATTGGCAGCTTATTTCCACGTTCTCACTCAACGGGACACTCGCTTGTTCCATTGGGGGAGAACCGGGAGAGGTTCACTTTGAGATTACCGGAGGAGGTAAGAAAGGAGCTTCTAAACTCCACACTGAACCGCACGAAAAGTTGCGTAACCTTCACTAGAATGAGTAGCGAGCGAAGGGGTTACCGGACAAGAAGCGTGGGTAGTAGAGGTGGGAGGAACGAGGAGCGGTGGGGGTTCACATTGACGCGGCCGTTTATCAATAGGAGCGGTTCCAGTTCCAGGAAGCCACCGGTGGCAAGGGACAACTTGGGTGAGCGATCTTCTGATCAGTTACGTCCAGATCGAGATGATTAG 1113 0.5301 MTIFRETRAPTILSLCISDHGLPSLSLLLLLLHTLPPSSAQLPNIPSPPPPDPFSRFRFDKTMAIILVVLVLVFFVLGFLSVYSRRCAERRIRGTLDPNNPNGSSRGHPRGLDPEIIHTFPTFVYSTVKGLKIGKSTLECAVCINEFQDDETLRFIPKCSHVFHPDCIDLWLSSHSTCPVCRANLVPRPGDVSFVAIQIPDAALEPDRLSDSDDQQNRDIIQLDDNGNRVAGSPKVNLLSRSKTTRSGSTGFRIGSLFPRSHSTGHSLVPLGENRERFTLRLPEEVRKELLNSTLNRTKSCVTFTRMSSERRGYRTRSVGSRGGRNEERWGFTLTRPFINRSGSSSRKPPVARDNLGERSSDQLRPDRDD 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1033 370 SMART ring_2 140 181 IPR001841 -
Glsi10g1033 370 Pfam Ring finger domain 139 182 IPR001841 -
Glsi10g1033 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 187 IPR013083 -
Glsi10g1033 370 PANTHER RING FINGER DOMAIN-CONTAINING 44 192 - -
Glsi10g1033 370 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Glsi10g1033 370 MobiDBLite consensus disorder prediction 352 370 - -
Glsi10g1033 370 FunFam E3 ubiquitin-protein ligase ATL6 101 188 - -
Glsi10g1033 370 CDD RING-H2_EL5-like 139 182 - -
Glsi10g1033 370 SUPERFAMILY RING/U-box 134 189 - -
Glsi10g1033 370 MobiDBLite consensus disorder prediction 338 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1033 Glsi-ChrGlsi10 6887302 6888414 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1033 18 342 Rapid Response to Elicitors AT3G05200 40.176 1.75e-64 208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1033 10 6887302 6888414 Glsi08g0896 08 6663131 6666041 CCT
Glsi10g1033 10 6887302 6888414 Glsi10g1033 10 6887302 6888414 ECH