Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1027 ATGCGAAGGTTTAGTTGGTTAACGCCGTATCGGCGTAAATTACTTTCGTCTATGGCCTCTGAATCGCTAGTTGATAAAGGAAAGTCCATTACTTTGACGAGTTGCAAATTTGCTAAAATAAATGACGAGCTTTTGATTCCAAGAATACCTTTGAGACATCGTTATATTCATGCCACAGCAATTCTTTCTTCCATTGAACGAGACTACTATCGAATTCTTGGTGTTCCTGAAAATGCCAGTCAGGACGAGATAAAGAAGGCATTTTACACACTAGCTAAAAAGTACCATCCAGATGCAAGTAAGACTAATCCATCTGCGAAGAGGAAATTTCAAGATATAAGGGAAGCTTATGAGACCTTGAGAGATTCTAAAAAGAGGGCACAGTATGACAAGATGCGTTCACGTGGTTCAGAGAACATAGAATATGATGATGATGATGCAGAAAGGCTTAGAAATGCTTATCGTTCCCACTTTTCTGATTCATTTCATAGAGTCTTCTCTGAGGTCGAGATATCACTTTCTTTCTCAGAAGCTGTGAAGGGGTGCACCAAACATGTTTCTTTTGATGCTTTTGTTCCCTGCGATTTTTGCAAGATAGTTGAGTTTCTTTATAATGCAGATGGGCAAGGCTATCCACATAATGCCAAGGCAAACATTTGTCCAACGTGCAGGGGCTTAGGTAGAGTTACAATCCCTCCATTTACATCAACATGCATTACTTGTAAAGGATCAGGCCGTGTCACCAAGGACAATTGTAAGTCGTGTAGAGGATCTGGGGTGGTTGAAGGCATCAAAGAGGTTAAAGTTACAATACCAGCAGCAAGTTATCTCACTATGTTGGTGGCTAAGGATCCTGTCTTTGTCAGAGATGGTGCAGATATTTATGTGGAGTCTAATATCAGCTTTACACAAGCTATTCTTGGTGGCAAAGTTGAGGTGCCTACTTTATTAGGGAAGATGCAAGTAAAGATACCTAAGGGTGTTCAACCAGGACAGCTTCTGGTATTAAGAGGCAAAGGACTTCCAAAGCATGGTTTTCTTGTAGACCATGGAGATCAGTATGTGCGCTTCCGTGTTAACTTTCCCACTGCAATTAATGAACGACAACGTGCTATACTAGAAGAACTTGCAAAGGAGGAAATAAATGAGGGAAACAACTCATCAATTGAAGGAAATTGGTACGTCCCCTCTATAAATTATGATTGCAATGGGGATACCTTGCTGAGGGAAAATGTGATTGCTGCATTCTTCATCCTTACAGATTATGTTAGTGGAAGGCTTATGTAA 1287 0.4048 MRRFSWLTPYRRKLLSSMASESLVDKGKSITLTSCKFAKINDELLIPRIPLRHRYIHATAILSSIERDYYRILGVPENASQDEIKKAFYTLAKKYHPDASKTNPSAKRKFQDIREAYETLRDSKKRAQYDKMRSRGSENIEYDDDDAERLRNAYRSHFSDSFHRVFSEVEISLSFSEAVKGCTKHVSFDAFVPCDFCKIVEFLYNADGQGYPHNAKANICPTCRGLGRVTIPPFTSTCITCKGSGRVTKDNCKSCRGSGVVEGIKEVKVTIPAASYLTMLVAKDPVFVRDGADIYVESNISFTQAILGGKVEVPTLLGKMQVKIPKGVQPGQLLVLRGKGLPKHGFLVDHGDQYVRFRVNFPTAINERQRAILEELAKEEINEGNNSSIEGNWYVPSINYDCNGDTLLRENVIAAFFILTDYVSGRLM 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1027 428 Gene3D - 172 273 - -
Glsi10g1027 428 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 38 383 - -
Glsi10g1027 428 Pfam DnaJ C terminal domain 168 362 IPR002939 -
Glsi10g1027 428 SUPERFAMILY Chaperone J-domain 67 136 IPR036869 -
Glsi10g1027 428 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 181 261 IPR036410 -
Glsi10g1027 428 Gene3D - 194 259 - -
Glsi10g1027 428 ProSitePatterns Nt-dnaJ domain signature. 110 129 IPR018253 -
Glsi10g1027 428 ProSiteProfiles Zinc finger CR-type profile. 181 264 IPR001305 GO:0031072|GO:0051082
Glsi10g1027 428 Hamap Chaperone protein DnaJ [dnaJ]. 65 411 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Glsi10g1027 428 Gene3D - 283 391 - -
Glsi10g1027 428 CDD DnaJ_zf 194 259 IPR001305 GO:0031072|GO:0051082
Glsi10g1027 428 Pfam DnaJ domain 68 130 IPR001623 -
Glsi10g1027 428 ProSiteProfiles dnaJ domain profile. 68 133 IPR001623 -
Glsi10g1027 428 CDD DnaJ 68 122 IPR001623 -
Glsi10g1027 428 PRINTS DnaJ domain signature 125 144 IPR001623 -
Glsi10g1027 428 PRINTS DnaJ domain signature 88 103 IPR001623 -
Glsi10g1027 428 PRINTS DnaJ domain signature 105 125 IPR001623 -
Glsi10g1027 428 PRINTS DnaJ domain signature 70 88 IPR001623 -
Glsi10g1027 428 SUPERFAMILY HSP40/DnaJ peptide-binding domain 286 373 IPR008971 GO:0006457|GO:0051082
Glsi10g1027 428 SMART dnaj_3 67 125 IPR001623 -
Glsi10g1027 428 Gene3D DnaJ domain 65 171 IPR036869 -
Glsi10g1027 428 CDD DnaJ_C 260 363 - -
Glsi10g1027 428 FunFam Chaperone protein dnaJ 1, mitochondrial 282 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1027 Glsi-ChrGlsi10 6842950 6850588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1027 64 135 C2H2 Transcription Factor Family AT1G74250 38.961 9.46e-08 52.4