LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g1023	ATGAGGAAGAAAAGAAAAGGAAGTGAGACAGATGCATCCTCAAATCTGCCAGAAATTTTGACTTCAAATCATGGGTCTCATTCATCTAATTTGAAATCTCATTACTCGCTAGAAGATTGTTCAAGGTTGAAGAAGAGATGTAAAGAAGATGCCGATACAGAACCGGTTGCTTCCTGTAAAAGTAGGCTAGCAGGCTTTGCCACTGCTCCACTTTGTGGGACATCATCTTTGATCACTCCTGGAAGAGGTCTCAAGAGGAAGATAGGATGCATCGAGGTTGCTACACAGATGGGCAGGAAGAAGAAGATTGAGGATGATTATGTTTCTGGTGAAACAATTGGGCAAGGCAAATTTGGATGTGTTTGGTTGTGTCGGTCCAGACTTAGTGGAACAGAATATGCATGCAAGACTCTGAGGAAGGGGGAGGAAACAGTTCATCGAGAAGTGGAGATAATGCAACATTTATCTGGACATCCTGGGGTTGTGACACTGCAGGCAGTGTATGAGGAAGCTGAATCCTTTCATCTTGTTATGGAATTGTGCTCTGGGGGGCGATTGATCGATAGGATGGTCAAAGAGGGCCCATATTCAGAACAGCGGGCTGCTAATGTACTCAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAACCTGAGAATATTCTGCTCACTACATCAGGAAAAATAAAGCTTGCAGATTTTGGCTTGGCCATGAGAATTTCTAATGGTCAGAACTTGACTGGTTTGGCTGGAAGCCCTGCATATGTTGCTCCGGAGGTATTGTTAGGTAGCTATTCTGAGAAGGTGGATATTTGGAGTGCTGGAGTTCTCCTGCATGCTCTGTTAGTTGGCCTTCTTCCATTTCAAGGAAATTCGTTGGAAGCAGTCTTTGAAGCTATTAAGAACGTCAAACTGGATCTCCAAAAGGGGATGTGGGAATTGATATCTAAGCCTGCACGAGATCTTGTTGGGAGGATGCTGACAAGGGATGTTTCAGCAAGGATAACAGCTGATGAAGTACTTAGGCATCCATGGATATTATTCTACACAGATCCTACATTAAAAACACTGCCTATCAAACCAAAATTGAAGCACCAAATTGGAGCCACTTGCCGCCAGTTTGTTGTTGCGCCTGAACCTGGGTTGGGAGGAAACAGGATAGACGACGGTTCCCTTAATGAAGTTTCAAGCCCGCTTTCATCCTCCGAAAGTTGCTATTCAGAAGGTCAGGATGATTGTGTGTTGATTGATGTGCTCGCCTCTGCAATTTCACGTGTGAGGATATCCGAACCAAAGAGGAGCAGGTTGTGTGGTCCAACAGGTCCGATAGATCAGCAAGGTTCATCTAACATGAAGGCTAACAACCTCTGTAAAGCATTTTGA	1410	0.4418	MRKKRKGSETDASSNLPEILTSNHGSHSSNLKSHYSLEDCSRLKKRCKEDADTEPVASCKSRLAGFATAPLCGTSSLITPGRGLKRKIGCIEVATQMGRKKKIEDDYVSGETIGQGKFGCVWLCRSRLSGTEYACKTLRKGEETVHREVEIMQHLSGHPGVVTLQAVYEEAESFHLVMELCSGGRLIDRMVKEGPYSEQRAANVLKEVMLVIKYCHDMGVVHRDIKPENILLTTSGKIKLADFGLAMRISNGQNLTGLAGSPAYVAPEVLLGSYSEKVDIWSAGVLLHALLVGLLPFQGNSLEAVFEAIKNVKLDLQKGMWELISKPARDLVGRMLTRDVSARITADEVLRHPWILFYTDPTLKTLPIKPKLKHQIGATCRQFVVAPEPGLGGNRIDDGSLNEVSSPLSSSESCYSEGQDDCVLIDVLASAISRVRISEPKRSRLCGPTGPIDQQGSSNMKANNLCKAF	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g1023	469	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	220	232	IPR008271	GO:0004672\|GO:0006468
	Glsi10g1023	469	Pfam	Protein kinase domain	107	355	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g1023	469	FunFam	Serine/threonine-protein kinase PEPKR2	98	424	-	-
	Glsi10g1023	469	CDD	STKc_CAMK	106	354	-	-
	Glsi10g1023	469	SUPERFAMILY	Protein kinase-like (PK-like)	97	384	IPR011009	-
	Glsi10g1023	469	MobiDBLite	consensus disorder prediction	1	31	-	-
	Glsi10g1023	469	MobiDBLite	consensus disorder prediction	12	31	-	-
	Glsi10g1023	469	Gene3D	Transferase(Phosphotransferase) domain 1	98	382	-	-
	Glsi10g1023	469	ProSitePatterns	Protein kinases ATP-binding region signature.	113	136	IPR017441	GO:0005524
	Glsi10g1023	469	ProSiteProfiles	Protein kinase domain profile.	107	355	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g1023	469	PANTHER	SERINE/THREONINE-PROTEIN KINASE	92	364	-	-
	Glsi10g1023	469	SMART	serkin_6	107	355	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g1023	Glsi-ChrGlsi10	6824628	6827390	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g1023	102	355	EF-hand Containing Proteins	AT4G35310	44.318	2.95e-77	249

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Glsi10g1023		Pkinase	4.3e-69	CL0016