Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1015 ATGGAATTTGAGGAGCTTGAAGAGCAAGAGGAGGAGGAGGAGGATATGGGGAGCCCGGTGCAGCCTCTAGGCTACGGCTCGGGCAGGCCCAAAATGGCTGTCTCCGTGATGGGAGCTGAGGGAGGGGCATCCACAACGACAGCTGGCAGGAAAGTTGGGTCAACAGCGACAGTCAGGTACAGAGAATGCCAAAAGAACCACGCAGTCAGCATCGGTGCCCACGCCGTGGACGGTTGCGGAGAGTTCATCGCGGCTGGAGAAGAAGGGACGCTCGACGCGCTAAAATGCGCTGCCTGCAACTGTCACCGCAATTTTCACCGTAAGGAGACGGAGGGGGAAATGACCTTGTACCAGCAGCCGCAGCCGCATCCGTATCACCAGCAGTTCCCCCACTACTATCGTCCGCCGCCGCCCCCAGCCGCTGGGTACCTACACCATCATCTGACAGCCCCAGCGTTGGCGCAGCAGCGGCCGTTAGCTCTACCAGCTGCGGCATCGGGAGGGGCATTCAGTAGAGATGAGGAAGACATGTCAAATCCGAGCAGCAGCGGAGGCGGCGGTGTCGGGGGTAGTGGTAGCGAGAGGAAGAAAAGGCATAGGACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGCATTTGCGGAACGGCTGGGGTGGAGAATCCAGAAGCATGACGAAGGTGCCGTGGAGGAATTCTGTGCCGAGACTGGTGTCAAGAGACATGTACTCAAGGTTTGGATGCACAATAATAAGCACACTCTTGGTAAGAAACCCTAA 780 0.5782 MEFEELEEQEEEEEDMGSPVQPLGYGSGRPKMAVSVMGAEGGASTTTAGRKVGSTATVRYRECQKNHAVSIGAHAVDGCGEFIAAGEEGTLDALKCAACNCHRNFHRKETEGEMTLYQQPQPHPYHQQFPHYYRPPPPPAAGYLHHHLTAPALAQQRPLALPAAASGGAFSRDEEDMSNPSSSGGGGVGGSGSERKKRHRTKFTQEQKEKMLAFAERLGWRIQKHDEGAVEEFCAETGVKRHVLKVWMHNNKHTLGKKP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1015 259 NCBIfam homeobox domain, ZF-HD class 196 252 IPR006455 -
Glsi10g1015 259 Gene3D - 181 256 - -
Glsi10g1015 259 MobiDBLite consensus disorder prediction 1 31 - -
Glsi10g1015 259 MobiDBLite consensus disorder prediction 1 17 - -
Glsi10g1015 259 Pfam ZF-HD protein dimerisation region 58 110 IPR006456 -
Glsi10g1015 259 FunFam Zinc-finger homeodomain protein 2 188 257 - -
Glsi10g1015 259 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 109 IPR006456 -
Glsi10g1015 259 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 59 109 IPR006456 -
Glsi10g1015 259 SUPERFAMILY Homeodomain-like 182 257 IPR009057 -
Glsi10g1015 259 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 46 255 - -
Glsi10g1015 259 MobiDBLite consensus disorder prediction 163 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1015 Glsi-ChrGlsi10 6786067 6786846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1015 56 255 ZF-HD Transcription Factor Family AT4G24660 60.891 1.83e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi10g1015 ZF-HD_dimer 9.6e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1015 10 6786067 6786846 Glsi08g1301 08 9429474 9432897 CCT
Glsi10g1015 10 6786067 6786846 Glsi10g1015 10 6786067 6786846 ECH