Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0990 ATGAAAGGTGAATATGTAGAGCAACAGGGAAAGGGTGAAACGCCCAATATGTTCTCAAAGCTTCACCAACAACACCCATTCACCCACCACCACCACCCTTTCCAGCTCTCCCGCGAATCCCAAACCTCCGAAGAAGATGATAGCCGCAGCACCCGGAAGACCATTCCATCCGAGCCCAACTCCGCCGCCGACGGTGCAAGCATTGAGGTGGTCAGGCGTCCCAGGGGTCGCCCACCCGGATCGAAAAACAAGCCCAAGCCTCCCGTTATCATAACTCGAGACTCCGAGCCTGCCATGAGCTCCTACATTCTCGAAGTCCCAGGTGGAACCGACGTCGTCGAAGCCATTGCTCGGTTCTGTCGCCGCAAAAACACGGGTCTTTGTGTCTTAGCTGGCTCCGGAACCGTCTCCAACGTTACCCTCCGTCAGCCCTCTACCACTCCCGGAGCCATCGTTACATTTCACGGCCGTTTCGACATCCTCTCTATATCTGCAACCTTCCTAGCCCAGCAATCGGGGACTTTGCCACCCGTCCCCAATGGCTTCACTATCTCGCTGGCCGGCCCACAAGGTCAGATCGTTGGAGGATTAGTCGCCGGGGGTTTAATCGCAGCAGGAACGGTGTTCATCATAGCTGCGTCGTTCAACAACCCATCCTATCACAGGTTGCCGGGTGAAGAGGACGTGCAAAACTCGCTATCTGGCGGTGGTGGCGATGGGCAATCGCCGCCAGTATCCGGAGGCGGTGGGGACAGTGGGCACGGCCCCGCTGAGTCGTGCGGGATGTCCATGTATACCTGTCAACTGCCATCCGATGTGATTTGGGCTCCAACGGCAAGACCCCCTCCTTACTGA 855 0.5731 MKGEYVEQQGKGETPNMFSKLHQQHPFTHHHHPFQLSRESQTSEEDDSRSTRKTIPSEPNSAADGASIEVVRRPRGRPPGSKNKPKPPVIITRDSEPAMSSYILEVPGGTDVVEAIARFCRRKNTGLCVLAGSGTVSNVTLRQPSTTPGAIVTFHGRFDILSISATFLAQQSGTLPPVPNGFTISLAGPQGQIVGGLVAGGLIAAGTVFIIAASFNNPSYHRLPGEEDVQNSLSGGGGDGQSPPVSGGGGDSGHGPAESCGMSMYTCQLPSDVIWAPTARPPPY 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0990 284 FunFam AT-hook motif nuclear-localized protein 100 234 - -
Glsi10g0990 284 CDD DUF296 102 215 IPR005175 -
Glsi10g0990 284 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 217 IPR005175 -
Glsi10g0990 284 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 227 - -
Glsi10g0990 284 Gene3D - 99 234 - -
Glsi10g0990 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 276 IPR014476 GO:0003680
Glsi10g0990 284 MobiDBLite consensus disorder prediction 222 261 - -
Glsi10g0990 284 PIRSF ESCAROLA 8 276 IPR014476 GO:0003680
Glsi10g0990 284 MobiDBLite consensus disorder prediction 32 53 - -
Glsi10g0990 284 MobiDBLite consensus disorder prediction 1 94 - -
Glsi10g0990 284 ProSiteProfiles PPC domain profile profile. 96 236 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0990 Glsi-ChrGlsi10 6640655 6641509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0990 1 284 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 60.274 1.29e-107 311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0990 10 6640655 6641509 Glsi10g0990 10 6640655 6641509 ECH