Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0987 ATGCTTCCTTTTCGGAGTTTCTATGGGTTTGAGAGCTGGTTAGATCACAGTGGCTATTTTCAGGAACCGAGCTCGTTGGTCAAGTCCAAGGAACTGGATGGTGGGAAATCAGTTTTGAGCTCCACATTGACGGCTGAGAGGAGATCAATGGAAGCATGCAAGAGTCACAGGGAAGCTGAGAGGAGACGCCGGCAGCGAATCAACGCCCACCTCTCCACTTTGCGCTCTCTCCTCCCCAACACCGCGAAGTCGGATAAAGCCTCGTTACTAGCGGAGGTGGTCCAACACGTGAAAAAGCTAAGGAAACAGGCCGATGACGTGGCGCTTTATCACGACGGAGACTGGTCGTGCAATAGTAGTAGAGGCGAAGCCGGGTCGGCGCCTGCAGACAGAAAGTCGTGGCCGTTCCCTGGCGAGTCCGATGAGGCAACTGTGAGTTATTGCGACGGTGCTGGGGAGCCGAAGCTAATGAAAGCAACCCTCTGCTGCGAGGACCGACCCCACCTCAACCGGGATCTTGCACAGGCCGTCCGATCGGTTCGGGCTAAGGCAGTGCGGGCTGAGATGATGACCGTTGGTGGGCGAACCAAGACTGTCGTGATGATGCAATGGCCTGGTGCGGAAGAGGAGGGAGTTGGAGCATTGGAACGGGCTTTGACGGCTGTTGTAGAGAATCGGACTTTGGTGAGTTCTGGGCTGGGCCGAATGGTGTTGGGGCAGAAACGAGCCCGGCAATGTTATGATTCCCCTGCTGGGGGTGAAAGTGGCTTCTTGCCGAGGACTGCTAACATGTAA 795 0.5585 MLPFRSFYGFESWLDHSGYFQEPSSLVKSKELDGGKSVLSSTLTAERRSMEACKSHREAERRRRQRINAHLSTLRSLLPNTAKSDKASLLAEVVQHVKKLRKQADDVALYHDGDWSCNSSRGEAGSAPADRKSWPFPGESDEATVSYCDGAGEPKLMKATLCCEDRPHLNRDLAQAVRSVRAKAVRAEMMTVGGRTKTVVMMQWPGAEEEGVGALERALTAVVENRTLVSSGLGRMVLGQKRARQCYDSPAGGESGFLPRTANM 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0987 264 Gene3D - 46 108 IPR036638 GO:0046983
Glsi10g0987 264 PANTHER TRANSCRIPTION FACTOR BHLH30 39 245 IPR045847 GO:0003700|GO:0006355
Glsi10g0987 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Glsi10g0987 264 SMART finulus 57 106 IPR011598 GO:0046983
Glsi10g0987 264 Pfam Helix-loop-helix DNA-binding domain 53 100 IPR011598 GO:0046983
Glsi10g0987 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 107 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0987 Glsi-ChrGlsi10 6624300 6625181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0987 48 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.642 4.07e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi10g0987 HLH 1.4e-11 No_clan