Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0985 ATGGGTGGTGTAGCTTCTTTCAAGCCATTCACCAGATTTTTCTTCCTTATCATCCTCATTTTCATTGGCCCCTGGATTTTTGCAGAGGCTAAAGATACCAGAGAAACGCCTCCTTCGAATCTTGACGGCGGTGAAGGAGTGGGTGACATTGCCACCGGAAAGTCTCCTCCTTCATTATCCCCACTTTCTCCATCCCCAGGGAAAAGCTCTGCCTTGAAGCCGAGCGTAGTCATTGTAGTGGCGGTATTGACCACCATGTTCTCTCTTACCTTTCTCATCCTCCTCTATTTCAAACACTGTAAGCCCGGGAATGTCTCCTCTAGAAACTCAAGCGGAGGCCCGGTTTCTGTGGGGAGAAACAACTCCGGCATTGACCGGACCGTGATTGAGTCCTTACCCATTTTCCGGTTCGGATCGCTTCGAGGACAAAAAGACGGTCTCGAATGCGCGGTTTGCCTAACCCGGTTTGAGTCATCGGAGGTTCTTCGGTTGCTTCCAAAATGTAAGCATGCCTTCCATGTCGAGTGCGTCGATACATGGCTAGACGCACATTCTACTTGCCCGCTTTGTCGCTATCGGGTCGACCCGGAAGACATTCTGCTAGTGGAGGAAGCAAAGATTTTGTCGCAAAATCAGCCCATTCCACCATCCCAAAACTCCGACAATCCGGAACAACATTTGGACATAGAGAGCGGGAGACACGGGACGGAACCGGATTTACAGAATGGGTTGGAGTCAAATTCAAATCTTCGACGAGTTTCCGGGAGGCATTCGTCAGTGGGAGAGAAGGGAGGAGGTGGATTCTTACAGATTATATTGCAGCAGAGAGGGAACGTGGAGGGCGAAACAACTCAGCAGAACAAAACGACACCATTTAGAAGATCTCTAGACAGTGCGACCTCCATGTCGAAAAAGAGAAAGGAGGGTGTGAGTGTGAGAGAGGGTCCCAGAAAAGATGGGCTATTGTTGATGGAAAACAAGCACAGGTTGGAGCACCGGATCATTGTGTCTCCGTCCCAAAAACCCAATGTGCCGCATCAAAGGTGGAGCGATGTACAAGCGTCGGATCTGCTTTATCTAACCTCTGAAATGATTATCAGTGAGGACAGCCATAGATTGTCGTCTTGCTCAGGACCGTCGCTTTCGCGGCGGCAGCAACAGAATATGCAGCTGCCGTTGTACTGGAAGAGAGGAAGAACGAGAAGCACAGTAGAGGAGGACAGTAGCATTGATGGGAACCGTTGGGGAGGGAGAGGCGTAATAAATTCGAGAAGCGTGTCGGAAATCACGGGATTGAGCAGGTGCCATCGCGGAGGAGAAGAAGTGAGAAGGGCCGGAGTAGTTTCGAGGTGGTTGGCTTGGATGTCTCAATCACAAGAAGCTGTACGGTAG 1392 0.5036 MGGVASFKPFTRFFFLIILIFIGPWIFAEAKDTRETPPSNLDGGEGVGDIATGKSPPSLSPLSPSPGKSSALKPSVVIVVAVLTTMFSLTFLILLYFKHCKPGNVSSRNSSGGPVSVGRNNSGIDRTVIESLPIFRFGSLRGQKDGLECAVCLTRFESSEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEEAKILSQNQPIPPSQNSDNPEQHLDIESGRHGTEPDLQNGLESNSNLRRVSGRHSSVGEKGGGGFLQIILQQRGNVEGETTQQNKTTPFRRSLDSATSMSKKRKEGVSVREGPRKDGLLLMENKHRLEHRIIVSPSQKPNVPHQRWSDVQASDLLYLTSEMIISEDSHRLSSCSGPSLSRRQQQNMQLPLYWKRGRTRSTVEEDSSIDGNRWGGRGVINSRSVSEITGLSRCHRGGEEVRRAGVVSRWLAWMSQSQEAVR 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0985 463 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Glsi10g0985 463 MobiDBLite consensus disorder prediction 240 255 - -
Glsi10g0985 463 SUPERFAMILY RING/U-box 128 196 - -
Glsi10g0985 463 MobiDBLite consensus disorder prediction 280 298 - -
Glsi10g0985 463 MobiDBLite consensus disorder prediction 210 266 - -
Glsi10g0985 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 198 IPR013083 -
Glsi10g0985 463 FunFam RING-H2 finger protein ATL43 124 198 - -
Glsi10g0985 463 CDD RING-H2_EL5-like 148 191 - -
Glsi10g0985 463 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 63 457 - -
Glsi10g0985 463 MobiDBLite consensus disorder prediction 210 225 - -
Glsi10g0985 463 MobiDBLite consensus disorder prediction 299 314 - -
Glsi10g0985 463 SMART ring_2 149 190 IPR001841 -
Glsi10g0985 463 MobiDBLite consensus disorder prediction 280 314 - -
Glsi10g0985 463 MobiDBLite consensus disorder prediction 34 71 - -
Glsi10g0985 463 Pfam Ring finger domain 148 191 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0985 Glsi-ChrGlsi10 6615265 6616656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0985 69 454 C3H Transcription Factor Family AT5G05810 44.976 4.36e-85 265