Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0982 ATGTCTCCACGGAGCCTTAGCCTTAGTTGTTTCTGGGAAGAAGGGGCCGGGTTTTATCTTCACTTTAAACAGTTTGCTTTGGGGTGGGCAGCTTTGGTGAAAGCTTTAGTTGACTATCAACTAAACAGGCTGGTGGGGAAAAGGTTCCATGGTTTAGTTATAAAAGGGAATGCTCCCTTTCCGTTCTTGTACACCAGCCCTAATCAAGGTTATTCTGGGGTAACCTATTGCCCAGATCTGAAAACTGGAAATATTAATATGGCGAGGGAGAAGATCAAGATCAAGAAAATTGACAACGTAACGGCGAGGCAGGTGACTTTCTCTAAGAGAAGACGAGGTCTCTTCAAGAAAGCCGCGGAGCTTTCTGTACTTTGTGATGCTGAGGTTGGTCTCATTATTTTCTCAGCTACCGGCAAGCTTTTTGAATATGCCAACTCCAGTGTGAAGGACATAATTTCAAGGTATAATATGCACTTCAACGATATCAACAAACTGGATAGACCTTCGATAGAACTGCAGGTAGAGAACAGCAATAACATCAAATTGATTAAGGAAGTTGCCGATAAAACGAAGCAGCTAAGGCAGATGAAAGGCGAGGATCTTGAAGGACTAAACCTAGAAGAGTTGCGGCAACTGGAACAAATGCTTGGAACAGGACTCAGCCGGGTATCTGAGACGAAGGAAAATCGGATTATGGGTGAGATTACTTCACTTCAGAAAAAGGGAATGGAGTTGATTGAACAGAACAAGCGGCTTAAACAGAAGTTATTAAAAGCGGGATCGCAGTTGGAGATGCTGCGTAGAGGAAAAAGACCTGTCCTGGTGGACTCAGATATTGCCATACAGGAGGAAGGAGTCTCGTCAGAGTCTATGACCAACGTTTACAGCTGCAACAGTGGCCCTCCTCTTGAGGATGATTCCTCTGACACTTCTCTAAAGTTAGGGTTACCCTACTCTAACTGCGATAGCAGGGTGTAA 978 0.4438 MSPRSLSLSCFWEEGAGFYLHFKQFALGWAALVKALVDYQLNRLVGKRFHGLVIKGNAPFPFLYTSPNQGYSGVTYCPDLKTGNINMAREKIKIKKIDNVTARQVTFSKRRRGLFKKAAELSVLCDAEVGLIIFSATGKLFEYANSSVKDIISRYNMHFNDINKLDRPSIELQVENSNNIKLIKEVADKTKQLRQMKGEDLEGLNLEELRQLEQMLGTGLSRVSETKENRIMGEITSLQKKGMELIEQNKRLKQKLLKAGSQLEMLRRGKRPVLVDSDIAIQEEGVSSESMTNVYSCNSGPPLEDDSSDTSLKLGLPYSNCDSRV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0982 325 MobiDBLite consensus disorder prediction 290 311 - -
Glsi10g0982 325 Pfam K-box region 178 256 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi10g0982 325 ProSitePatterns MADS-box domain signature. 89 143 IPR002100 GO:0003677|GO:0046983
Glsi10g0982 325 SMART madsneu2 87 146 IPR002100 GO:0003677|GO:0046983
Glsi10g0982 325 SUPERFAMILY SRF-like 89 159 IPR036879 GO:0003677|GO:0046983
Glsi10g0982 325 Gene3D - 99 167 IPR036879 GO:0003677|GO:0046983
Glsi10g0982 325 PANTHER SERUM RESPONSE FACTOR HOMOLOG 89 254 - -
Glsi10g0982 325 Coils Coil 235 255 - -
Glsi10g0982 325 PRINTS MADS domain signature 124 145 IPR002100 GO:0003677|GO:0046983
Glsi10g0982 325 PRINTS MADS domain signature 109 124 IPR002100 GO:0003677|GO:0046983
Glsi10g0982 325 PRINTS MADS domain signature 89 109 IPR002100 GO:0003677|GO:0046983
Glsi10g0982 325 ProSiteProfiles K-box domain profile. 172 269 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi10g0982 325 ProSiteProfiles MADS-box domain profile. 87 147 IPR002100 GO:0003677|GO:0046983
Glsi10g0982 325 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 96 143 IPR002100 GO:0003677|GO:0046983
Glsi10g0982 325 CDD MADS_MEF2_like 88 155 IPR033896 GO:0000977|GO:0045944
Glsi10g0982 325 FunFam Transcription factor, MADS-box 99 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0982 Glsi-ChrGlsi10 6585408 6594349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0982 87 318 MADS-box Gene Family AT2G22540 57.613 1.43e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi10g0982 K-box 2.7e-14 No_clan