Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0963 ATGTACGGACACTCCCCGACTATGAACATAGCCGCGCAGATCGGCACCGGTGAAGATGACGATGGCTGCGCCGAGTCCATGGACAACCACCACATTCATTATGAAACCCCTGCTCTCGAAGATGGTGGCGGTGGAGTTGGTGGTGGAGCGGAGGATGTTACCTCCGATACTTTATATGTCTCTGGTAGTGGAGTTCCTGAAATGTCTATCCGCGACGATTCCAGCCAACTTACGCTTTCGTTTCGCGGCCAAGTGTATGTGTTCGACTCCGTTACACCTGATAAGGTTCAAGCGGTATTATTACTGTTGGGTGGATGTGAACTATCGTCAGGTTCGCAATGTGCGGAGATAGGGCCCCAAAATCAGAGGGGTGCCATGGAATATCCTGGAAGATGTAGTCAACCACAGCGAGCAGCCTCATTAAGTAGGTTCCGCCAGAAGAGGAAAGAGCGATGCTTTGACAAGAAAGTTAGATATAGTGTACGCCAAGAAGTTGCGCTCAGGATGCACCGTAATAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCTAATAGTTGGGGTACAGTCCAGGAGTCAGGGCAGGATGACAGTCAATCAGAAACCTTCTGTACGCACTGCGGCATAAGTTCAAATTCTACCCCAATGATGCGGCGGGGTCCATCTGGTCCGAGATCACTTTGCAACGCTTGTGGGCTCTTTTGGTCAAATAGGGGTACTTTGAGGGACCTTTCCAAGAGGAACCAGGAACATGCTCTTGCTCCTGCTGAGCAGGTCGATGAAGGTAACGAATCAGACAGTCGGACGGCCATCCCTACACATAACAATCTTGTTACTTTCTCTGATAATGATAACCCAGCTTTGATAGCTGATCGTTGA 882 0.4921 MYGHSPTMNIAAQIGTGEDDDGCAESMDNHHIHYETPALEDGGGGVGGGAEDVTSDTLYVSGSGVPEMSIRDDSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSGSQCAEIGPQNQRGAMEYPGRCSQPQRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSWGTVQESGQDDSQSETFCTHCGISSNSTPMMRRGPSGPRSLCNACGLFWSNRGTLRDLSKRNQEHALAPAEQVDEGNESDSRTAIPTHNNLVTFSDNDNPALIADR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0963 293 MobiDBLite consensus disorder prediction 173 201 - -
Glsi10g0963 293 SMART GATA_3 199 252 IPR000679 GO:0006355|GO:0043565
Glsi10g0963 293 CDD ZnF_GATA 204 250 IPR000679 GO:0006355|GO:0043565
Glsi10g0963 293 ProSitePatterns GATA-type zinc finger domain. 205 232 IPR000679 GO:0006355|GO:0043565
Glsi10g0963 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 251 - -
Glsi10g0963 293 Pfam CCT motif 137 179 IPR010402 GO:0005515
Glsi10g0963 293 ProSiteProfiles GATA-type zinc finger domain profile. 199 258 IPR000679 GO:0006355|GO:0043565
Glsi10g0963 293 PANTHER GATA TRANSCRIPTION FACTOR 28 25 268 IPR045280 GO:0006355
Glsi10g0963 293 Gene3D - 195 254 IPR013088 GO:0006355|GO:0008270
Glsi10g0963 293 ProSiteProfiles Tify domain profile. 70 105 IPR010399 -
Glsi10g0963 293 Pfam GATA zinc finger 205 241 IPR000679 GO:0006355|GO:0043565
Glsi10g0963 293 Pfam tify domain 74 104 IPR010399 -
Glsi10g0963 293 SMART tify_2 70 105 IPR010399 -
Glsi10g0963 293 ProSiteProfiles CCT domain profile. 137 179 IPR010402 GO:0005515
Glsi10g0963 293 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0963 Glsi-ChrGlsi10 6398880 6405888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0963 13 292 Tify Gene Family AT4G24470 50.492 1.48e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi10g0963 CCT 3.7e-15 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0963 10 6398880 6405888 Glsi10g0963 10 6398880 6405888 ECH