Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0951 ATGGGGAGAGGGAAGATCGTGATAAGGAGGATCGACAATTCGACGAGCAGGCAAGTAACGTTCTCGAAACGAAGGAGTGGTTTGCTGAAGAAGGCTAAGGAGCTGGCAATCCTGTGCGATGCTGAGGTAGGAGTTATGATCTTCTCCAGCACTGGCAAGCTCTACGATTTCGCCAGCACCAGCATGAAATCAGTTACTGAACGATACTACAAAACAAAAGAGAATCATCATCAGCTTGGAAGTTCAACTTCTGAAGTAAAGCTATGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTGCAAAACTTGCAAGAAAGTCACCGGCAAATGATGGGAGAAGAACTTTCAGGTTTGACTGTCAAAGATTTACAGAGTTTGGAGAGCCAGTTGGATATTAGCGTTCGAGGTGTCCGTATGAAAAAGGAACAAATGTTAATGGATGAATTACAGGAACTAAACCGAAAGGGAAACCTCATACAAGAGGAAAATGTGGAACTGCATAAGAAGGTAAACCTAATTCATCAAGAAAACATGGAATTAAAAAAGAAGGTCTATGGAACAAGAGAAGGAAATGGGACAAACAGAAATTCTGTTCTCACCAATGGTCTAGGCATGGAAGAGGGTTTGCATGTGCCCGTGAATCTCCAGCTTAGTCAGCCTCACCAGCAAAACTATGAGGCACCTTCAGGAGCTACAAAGTTAGGGTATGATCTTAATCATTTGCAAATTACAACTGCATTGATGCATCTACGAGGGATGTATGTATCTTGA 771 0.4267 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASTSMKSVTERYYKTKENHHQLGSSTSEVKLWQREAAMLRQQLQNLQESHRQMMGEELSGLTVKDLQSLESQLDISVRGVRMKKEQMLMDELQELNRKGNLIQEENVELHKKVNLIHQENMELKKKVYGTREGNGTNRNSVLTNGLGMEEGLHVPVNLQLSQPHQQNYEAPSGATKLGYDLNHLQITTALMHLRGMYVS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0951 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi10g0951 256 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Glsi10g0951 256 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi10g0951 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi10g0951 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi10g0951 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi10g0951 256 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Glsi10g0951 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi10g0951 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 207 - -
Glsi10g0951 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi10g0951 256 Coils Coil 86 113 - -
Glsi10g0951 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi10g0951 256 Coils Coil 142 169 - -
Glsi10g0951 256 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Glsi10g0951 256 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi10g0951 256 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0951 Glsi-ChrGlsi10 6229979 6240781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0951 1 231 MADS-box Gene Family AT2G22630 58.228 2.32e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi10g0951 K-box 1.9e-25 No_clan