Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0948 ATGAATCAATTGACCGGTGGGGTAGAGCGCTCTGTTCGTTTTCGGGTTCCCTACCCTACCTCTCATAAAAGATCTCCTCTGCCACCACGCCGTTTTACTCCCATAACACCCACGCTCACCGCTTCAAACTCCTCCCATGGCATCCAATATCCTCAAACCCTAGCCCCCAAATTCCCTAAACCTCATTCAATTCCTAAAACCCTACACATGGAGAACCATTACCAGTCTTCCTACCCTGATTCCCGTGATTCCTCGCCGAATTCTCTCCAAGTCGATAATGAGAACCCCTCGTGGGACCAACCTCCCCATACCACTATCAACAAAAATTATAAAGTGAAGCTCATGTGCAGCTATGGCGGAAAAATCCAATTTAGGACCCACGATAACCAGGTTGGTTATATCGGCGGGGACACCAAAATTTTAGCCATTGATCGCAACATCAAGTTCTCGGCTATCCTGGAGAACCTCTCTTCGATTTGCGGTGCCGAGGTTTGCTTCAAATACCAACTTCCTGGTGAAGACCTCGACGCTTTAATTTCGGTCACCAACGATGAGGATCTAGAGCACATGATGGTTGAGTATGATCGGTTGTACCGTGCGTCGACGGCGAAGTCCGTTAGGCTGAGGTTGTTCCTGTTTCCGCTAAACAATTTGGCTCCGACGAGTTTTGGTTCGAACAATATGAAACCGGAGCAGCAGTGGTTTGTAGATGCTCTCAATTCTGTGCACATTCCTCACGTGGAGCGTTCTTCACCCTCGGCGCCTGTGTCTGCTGCTAATCCGGATTTTCTGTTTGGACTGGATAAGGGATATTCGGGGGTTCCAGCGGCGAAGTTGCCTCATTCTGCTCATGCTCCTTCTTCTACGGTTCTGGATGTAGTGGCGAAGGACTTGTCAGCGGGATCAGAGGGTGGATCTGAGGACCGGCAAGACGTGGGCGAACCGGTGGTGTCAGCCGTTGAGATCCAGAGACAAATCCAGGAGATACAGAGATTGCATCTTGGAAACAATGAGCAAATCCTACAACGCGAAAGCGAAGGCAATGGCAGGGTTAATACCACGGACCATTACTCTAAAAATCCAGAGAAAGTGGGGCGACCACTGGCGCTTGCGCCGGCGCATAGTGCTCACCGTCTAGAATCAGTTGCAGCATCGGCGGCAGTGTATTTGCCTGAAAGACATGTGACAGGTGCCGGTTATTCGATGGCGGCTTCTGCAACTGCAACTGAGCAGCCGGTGTATCTCATTGCAACACCAGCCGTAATGTACCATACTACCACTTTGCGACCCGTGAGTGGAGCAGTTGCTCAGCCTTACTATGGAGTCCCGAGAATAGGCCCAGCGGCCGATTTGTATAATGGGGCACCGCCAGCACCACTTTCACATCCAAAGTCCAGAATTGAAGGTTACTTTGAAACTGCTGGAATGGTACAGCCAAAGGTTGGGGTTGGGGTAGCCGAGCCTGGCTATGCTCAGGTGGTCTACGACAGTGCTGGCAGGCAGGTCTACTATGCGACCGCGGCATGGGGTGAGGTGGTGCCTCCTTACCAAGAGGTGGCATTGCCAGGTGGAACCGACGGGGCACAAGGTGGTGGAGCCTTGAATCAAGATGGCAAGTTTGAGGAGTTCTGGGTTGGAGTGTGCAATGCTGGAACCGAGTTTGCTGCAGTGAGAGAAACAAAGAAGAGAGCCATGGTGGTGAGGAAAGTAGGGAAGTATGAGGTCGGGAGGACGATTGGGGAGGGTACCTTTGCTAAAGTGAAGTTCGCTCAGAACACAGAGACTGGCGAGAGTGTCGCCATGAAAGTGCTCGATCGCAGCACCATCATCAAGCACAAAATGGTGGATCAGATCAAGAGGGAGATTTCTATTATGAAGCTAGTCAGACATCCGTATGTTGTTCGACTGTACGAGGTTCTAGCAAGCCGTACTAAGATTTATATCATATTGGAGTTCATTACAGGTGGTGAATTGTTTGATAAAATTGTGCACCATGGGCGTATTAGTGAAGCTGAATCTAGAAGATACTTCCAACAGCTTATTGATGGAGTAGACTTTTGCCATAGCAAGGGAGTTTATCACAGAGATTTGAAGCCTGAGAATCTTTTACTTGATTCACAAGGAAATATAAAGATTTCAGATTTTGGTTTGAGTGCATTGCCAGAACAGGGGGTTAGTATCCTTCGGACAACTTGTGGGACTCCAAACTATGTAGCTCCTGAGGTACTCAGTCACAAGGGTTACAATGGTGCTGTGGCAGATGTTTGGTCCTGTGGGGTTATCCTTTATGTTCTAATGGCTGGATATCTTCCCTTTGACGAGCTTGATCTTACCACGTTATACAGTAAGATCGACAAAGCAGAGTTTTCATGCCCTCCTTGGTTTCCCCTGGGAGCAAAATCTTTAATACATAGAATTCTGGATCCAAATCCTGAAACACGTATAACTATTCAACAGATAAGAAGTGATGAGTGGTTTCAGAAGGGCTACGTTCCTGTCAGTCTACTTGAGTATGAAGATGTAAATTTGGATGATGTAAATGCAGCTTTCGAGGATGCTGAGGATGAAACAGTTAATCAACAGAATGAGAATGAGGACATGGGTCCTTTAATGCTTAATGCATTTGACTTGATCATTCTATCTCAAGGCTTAAACCTAGCAACACTCTTTGATCGCGGACAGGACTCTATGAATTATCAAACACGCTTTGTCTCTCAAAAGCCAGCAAAAGTGGTTTTATCAAGTATGGAAGTTGTGGCACAATCAATGGGATTTAAGACACATATTCGCAACTATAAGATGAGAGTTGAGGGTACTTCAGCAGATAAGACTTCTTATTTCTCGGTGATCTTACAAATTTTTGAAGTTGCTCCCACATTTTTTATGGTGGACATTCAAAAAGCAGCTGGAGATGTGGGTGAATACCTCAAGTTCTACAAGAATTTTTGTAGCAATCTCGAGGATATCATCTGGAAACCGCCTCATGAAGCAAGCAAATCAAAGATTTCCAAGACTAAAAGCAAAAGGCGCTAG 3033 0.4698 MNQLTGGVERSVRFRVPYPTSHKRSPLPPRRFTPITPTLTASNSSHGIQYPQTLAPKFPKPHSIPKTLHMENHYQSSYPDSRDSSPNSLQVDNENPSWDQPPHTTINKNYKVKLMCSYGGKIQFRTHDNQVGYIGGDTKILAIDRNIKFSAILENLSSICGAEVCFKYQLPGEDLDALISVTNDEDLEHMMVEYDRLYRASTAKSVRLRLFLFPLNNLAPTSFGSNNMKPEQQWFVDALNSVHIPHVERSSPSAPVSAANPDFLFGLDKGYSGVPAAKLPHSAHAPSSTVLDVVAKDLSAGSEGGSEDRQDVGEPVVSAVEIQRQIQEIQRLHLGNNEQILQRESEGNGRVNTTDHYSKNPEKVGRPLALAPAHSAHRLESVAASAAVYLPERHVTGAGYSMAASATATEQPVYLIATPAVMYHTTTLRPVSGAVAQPYYGVPRIGPAADLYNGAPPAPLSHPKSRIEGYFETAGMVQPKVGVGVAEPGYAQVVYDSAGRQVYYATAAWGEVVPPYQEVALPGGTDGAQGGGALNQDGKFEEFWVGVCNAGTEFAAVRETKKRAMVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKREISIMKLVRHPYVVRLYEVLASRTKIYIILEFITGGELFDKIVHHGRISEAESRRYFQQLIDGVDFCHSKGVYHRDLKPENLLLDSQGNIKISDFGLSALPEQGVSILRTTCGTPNYVAPEVLSHKGYNGAVADVWSCGVILYVLMAGYLPFDELDLTTLYSKIDKAEFSCPPWFPLGAKSLIHRILDPNPETRITIQQIRSDEWFQKGYVPVSLLEYEDVNLDDVNAAFEDAEDETVNQQNENEDMGPLMLNAFDLIILSQGLNLATLFDRGQDSMNYQTRFVSQKPAKVVLSSMEVVAQSMGFKTHIRNYKMRVEGTSADKTSYFSVILQIFEVAPTFFMVDIQKAAGDVGEYLKFYKNFCSNLEDIIWKPPHEASKSKISKTKSKRR 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0948 1010 Pfam NAF domain 869 927 IPR004041 GO:0007165
Glsi10g0948 1010 Coils Coil 843 863 - -
Glsi10g0948 1010 SUPERFAMILY CAD & PB1 domains 127 221 - -
Glsi10g0948 1010 FunFam Non-specific serine/threonine protein kinase 866 992 - -
Glsi10g0948 1010 Gene3D - 133 213 - -
Glsi10g0948 1010 ProSiteProfiles NAF domain profile. 867 891 IPR018451 GO:0007165
Glsi10g0948 1010 MobiDBLite consensus disorder prediction 74 104 - -
Glsi10g0948 1010 SUPERFAMILY Protein kinase-like (PK-like) 570 850 IPR011009 -
Glsi10g0948 1010 MobiDBLite consensus disorder prediction 18 47 - -
Glsi10g0948 1010 FunFam Non-specific serine/threonine protein kinase 564 652 - -
Glsi10g0948 1010 Pfam Protein kinase domain 573 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0948 1010 SMART serkin_6 573 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0948 1010 CDD PB1_UP2 115 213 - -
Glsi10g0948 1010 CDD CIPK_C 873 988 - -
Glsi10g0948 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 692 704 IPR008271 GO:0004672|GO:0006468
Glsi10g0948 1010 Gene3D Kinase associated domain 1, KA1 866 992 - -
Glsi10g0948 1010 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 568 975 - -
Glsi10g0948 1010 Gene3D Transferase(Phosphotransferase) domain 1 653 833 - -
Glsi10g0948 1010 ProSitePatterns Protein kinases ATP-binding region signature. 579 611 IPR017441 GO:0005524
Glsi10g0948 1010 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 131 215 - -
Glsi10g0948 1010 Pfam PB1 domain 127 214 IPR000270 GO:0005515
Glsi10g0948 1010 Gene3D Phosphorylase Kinase; domain 1 564 652 - -
Glsi10g0948 1010 SMART PB1_new 126 215 IPR000270 GO:0005515
Glsi10g0948 1010 ProSiteProfiles Protein kinase domain profile. 573 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0948 1010 FunFam Non-specific serine/threonine protein kinase 566 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0948 Glsi-ChrGlsi10 6186598 6195336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0948 565 952 CBL-interacting serine-threonine protein kinases AT4G24400 84.794 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi10g0948 Pkinase 1.6e-71 CL0016