Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0945 ATGGAGCTCTATGAACATGATTTCATGGAGGAATTACTAGCTCTAAGAAGAGAAACATGGGACAGCAGCATTCCAACAGAAGAAAACCAGCTCCTCTCTAATGGTTATGGTTTTGACTGTTTTGATCCAAACACTGCAGGTTTTCTTCCAAATTTCTCCTGTCAAGAAGTTCCCCAAACTTACAACAACCACACCTTCAATGAAATCTACAGCTCCTTGCTTGACGAATTCTCTTCACCTCAGATCATTGATTCATCTTATAACACCCCTCCATTTCTGACTCCAGAAGACAACCCCTTGTCCATGATGGAAGAAGAGGATACTGGTTTGTTTGGGGAAGAGATTCAGAGTTTGGACCTCCAAACCACATGTAAGATAGAGCCCAGCCATTCCCCTGAGATGCCAGATTTCAACATGGGCGCGTGTTTGGAAAGAAAGAATCGAGCGAAGAAGCTGCAGGGGCAGCCCTCCAAGAATCTAATGGCCGAGAGGAGGAGGAGAAAAAGATTAAACGACCGCCTCTCAATGCTAAGATCAATTGTCCCTAAGATAAGTAAGATGGACAGAACATCTATACTTGGAGACACTATAGATTACATGAAAGAACTCCTGGAAAAAATAAAAAGTTTGCAGCAAGAAATAGTAGTAGATTCAAACATGGGGGGCATTTTCAAGGATGTAAAACCAAATGAAATCCTAGTGAGAACTTCACCCAAGTTTGATGTGGAGAGGAGGACCGTGGATACCCGGGTAGAAATTTGCTGTGCAGGGAAGCCAGGGTTGTTGCAATCTACAGTGAACACCCTGGAAGACTTAGGTCTTGAGATTCAGCAGTGTGTTATCAGCTGTTTCAATGATTTTACAATGCAGGCTTCTTGCTCGGAGGAATTGGAGCACAGGACAATACTGAGCTCGGAAGATATAAAGCAAGCATTATTTAGAAGCGCAGGATATGGAGGAAGATGTTTGTGA 972 0.4311 MELYEHDFMEELLALRRETWDSSIPTEENQLLSNGYGFDCFDPNTAGFLPNFSCQEVPQTYNNHTFNEIYSSLLDEFSSPQIIDSSYNTPPFLTPEDNPLSMMEEEDTGLFGEEIQSLDLQTTCKIEPSHSPEMPDFNMGACLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKIKSLQQEIVVDSNMGGIFKDVKPNEILVRTSPKFDVERRTVDTRVEICCAGKPGLLQSTVNTLEDLGLEIQQCVISCFNDFTMQASCSEELEHRTILSSEDIKQALFRSAGYGGRCL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0945 323 Gene3D - 144 217 IPR036638 GO:0046983
Glsi10g0945 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 215 IPR036638 GO:0046983
Glsi10g0945 323 Coils Coil 200 220 - -
Glsi10g0945 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Glsi10g0945 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 75 317 - -
Glsi10g0945 323 Pfam Helix-loop-helix DNA-binding domain 160 203 IPR011598 GO:0046983
Glsi10g0945 323 CDD ACT_UUR-ACR-like 249 290 - -
Glsi10g0945 323 SMART finulus 160 209 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0945 Glsi-ChrGlsi10 6152665 6153982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0945 82 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 53.469 1.87e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi10g0945 HLH 6.7e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0945 10 6152665 6153982 Glsi10g0945 10 6152665 6153982 ECH