Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0942 ATGTCTCCGCCGCTGCTCGGCATAGGCGAGGGAGAAGGTAAAAGCAATGTAACTTTACTGGTTTCCTCAACCACCATGGAAAGTGCACACCTCCACAGCTCAGAATTAAAAGAACGCAACTACATGGGATTATCTGATTGCTCTTCAGTGGACAGCTCAGTTCTGTCCTTTTCAAATGAGAGTAAAAGTAATCTGAACCTTAAAGCCACAGAGCTCAGGCTTGGTCTTCCAGGATCTCAGTCTCCTGAAAGAGACTCAGATCTCTTCTTAAGAAGCTCAACTCAATTTAATGAGAAACCTTTGTTTCCTTTGCGTCCTTTAACTGATGATCACCACTCCTCATCAAAGACTGCTATTTTGGGTAACAAAAGAGGGTTCTCAGATGCCATGAATGGGTTCTCAGAGGGGAAATTCCTAGCTAATTCGGAGGTCAATACTGTACTCTCCCCTAGGCCTTCTCATAACATGGGATTAAAAACTAGTTCTATGCTTGAGAATCATGGAGTTCAGCAAGCCAAAGCAAAAGAAGTAGCACCAACAAAGGTGACACTTGAGAGGCCTCATGTTGTCAATGAAACGAGACCAAATCTTGAAGTTTCTGCAAATAATAATAGCAATGCACCAGCTACCAAGGCACAGGTTGTGGGTTGGCCTCCTATAAGATCATTTAGGAAAAATTCATTGCATACTACTTCGAAGAACACTGAAGAAGTAGATGGAAAAGCAGGGTCTAGTGCACTGTTCATCAAAGTCAGCATGGATGGTGCTCCATATTTAAGGAAAGTAGATTTGAAGAACTACTCTGCATATCCCGAACTATCTTCTGCTTTGGAGAAGATGTTCTGCTGTTTTACCATAGGTCAATGTGGATCTCATGGAACTCTGGGCAGGGAGATCCTAAATGAAAGTAAGCTGAAGGATCTGCTTCATGGGTCAGAATATGTTCTCACTTATGAGGACAAAGATGGCGACTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTTATACATGCAAGAGGCTGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCCAGGGCTGTGGAAAAAAGTAAGAGTAGGAACTAG 1101 0.4314 MSPPLLGIGEGEGKSNVTLLVSSTTMESAHLHSSELKERNYMGLSDCSSVDSSVLSFSNESKSNLNLKATELRLGLPGSQSPERDSDLFLRSSTQFNEKPLFPLRPLTDDHHSSSKTAILGNKRGFSDAMNGFSEGKFLANSEVNTVLSPRPSHNMGLKTSSMLENHGVQQAKAKEVAPTKVTLERPHVVNETRPNLEVSANNNSNAPATKAQVVGWPPIRSFRKNSLHTTSKNTEEVDGKAGSSALFIKVSMDGAPYLRKVDLKNYSAYPELSSALEKMFCCFTIGQCGSHGTLGREILNESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIYTCKRLRIMKSSDAIGLAPRAVEKSKSRN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0942 366 SUPERFAMILY CAD & PB1 domains 244 347 - -
Glsi10g0942 366 FunFam Auxin-responsive protein 241 358 - -
Glsi10g0942 366 Gene3D - 241 360 - -
Glsi10g0942 366 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 353 IPR003311 GO:0005634|GO:0006355
Glsi10g0942 366 ProSiteProfiles PB1 domain profile. 246 348 IPR000270 GO:0005515
Glsi10g0942 366 Pfam AUX/IAA family 70 357 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0942 Glsi-ChrGlsi10 6138358 6141062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0942 249 353 B3 DNA Binding Superfamily AT2G46530 33.628 1.88e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi10g0942 AUX_IAA 1.6e-90 CL0072