Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0925 ATGGATCATCAATCCATCTTCTTCCTAATGGGACTCATCGTTTCCATGTCTTTTATTCCACAAGTCATCAGTAACAGGCAATCTCAGTTTTTAACTCTAATGAAGGAGTCCCTCGCCGGGAACTATCCGCTGGATTGGGATGTCACAGGAGGGAAACATGTCTGCAACTTCACTGGAGTTAGCTGCAACAACCAAGGTGACGTCATCAATCTGGACGTTTCCAGTTGGTCACTTTCTGGGAACTTCCCGTCAGATGTGTGCTCCTATCTGCCAGCGTTACGTGTTCTGCGTCTCGGCCACAACCGTTTAAGAGGAAAGTTTCCTGAGAGCATAATCAACTGTTCTCACTTGGAAGAGCTTAATATGAATCATATATACTATACAGGAAGCCTTCCAGATTTCTCACCTATGAAGTCTCTTAGGATCCTCGATTTGTCGTACAACTACTTTACGGGTCCGTTTCCCATGTCAGTATTTAATCTCACCAATATTGAGGTGCTTAACTTCAATGAGAATGGAGGTTTCAATTTTTGGGAGCTGCCAGAGGATATGTACAGGCTGAAAAATCTCAAGTCTGTGATCTTGACAACATGCATGGTGCGTGGCCGAATCCCGGCATCCATAGGAAACGTTTCATCTCTGGCTGATCTTGAATTGAGTGGAAATTACCTCACGGGTCAAATTCCTGTAGAGCTTGGATTGCTGAAAAACTTGCAGCAGCTTGAGCTTTACTATAACCAACTTGTGGGCAATATACCCGAGGAGATGGGAAATCTCACAGAACTCAGAGACTTGGACATGTCAGTCAATAAGTTGACGGGAAGACTCACAGAATCAATATGTGGCCTTCCCAAGCTTGAAGTCTTGCAGCTATACAACAATAGCCTTACAGGAGAAATCCCAGGTGTGATAGCAAACTCAACTACCTTAAGAATATTATCTCTTTATGACAATTTCCTGAGCGGAGAAGTCCCAATAAAGCTGGGTCAACTCTCAGGAATGGTAGTTCTAGACTTGTCCGAAAACAAACTATCTGGTCCATTGCCAACAGAGGTTTGCAAGGGAGGTAAACTGCTCTACTTTCTTGTACTGGATAATAAGTTTTCTGGTGAGATACCTCACAGTTATGCAACATGCTGGACACTGTTGAGGTTCCGAGTCAGTAATAACTATTTGATGGGCTCAATTCCCGAGGGGCTCCTCGGTCTGCCACACGTTTCAATTATTGATTTGAGTTACAATAATTTGACCGGTCCAATTTCTGAGAGAATTGGAAATCCAAGAAACTTGTCAGAACTATTCATGCAGAGGAACAGGATTTCAGGTGTTATACCTCCTACAATCTCCCGAGCTACTAATCTGGTCAAGATTGATTTCAGCAACAACCTTCTGTCTGGTCCTATACCTTCTGAAATTGGCAATCTAAAAAAGCTAAATCTACTAATGTTGCAAGGGAACAAGCTAAATTCTTTCATCCCCAGTTCACTTTCCTTATTGAAGTCCCTCAACGTTCTTGATCTCTCCAACAACCTTTTGACAGGTAGCATCCCTGAAAGTCTCTCTGATCTGCTACCCAACTCTATCAACTTTTCAAATAATTTGCTTTCTGGTCCAATTCCCTTCTCGTTGATAAAAGGAGGTTTAGTAGAAAGCTTCTCAGGGAACCCGGGTCTGTGTGTGGTATCAGTCTATGCTAATTCATCGGATCAAAACTTTCCCTTGTGTTCAAAGCCTTGCAACAGAAAGAGGATAAACACCTTCTGGGTAGCTGGGATTTCAGTGGTTTTGATCATAACTGGAGCTGTCTTGTTTCTGAAACGTAGGTGTAGCAAAGAGAGAGCTGCGGTGGAACATGATGAGACACTGTCTTCGTCATTCTTCTCTTATGACGTGAAGAGCTTTCACAGAATAACTATCGACCAACGGGAGATCATGGAGGGGATGGTCGAAAAGAATATAGTTGGGCATGGAGGGTCTGGGACAGTGTACAAGATCGTGTTGAAAAGCGGTGACTTTGTCGCAGTCAAGAGACTGTGGAGTCGAAAATCAAAGGATTCGGCTCCAGAGGATCGACTAGTTTTGGACAAGACTTTGAAAACTGAGGTCGAGACTCTGGGAAATATAAGACACAAGAACATTGTCAAACTCTACTGCTACTTCTCCAGTTTGGACTGCAGTTTGTTAGTATATGAGTACATGACAAATGGTAATCTTTGGGATGCTCTGCACAAAAGCTCCATCCATTTGGATTGGCCAACTCGCCATAAGATTGCACTGGGGACTGCCCAGGGTCTGGCATACCTCCACCACGATTTGCTTCCTCCTATTATTCATAGAGACATCAAATCCACTAATATCCTTCTGGATGTTAATTACCAACCCAAGGTTGCAGACTTCGGGATCGCCAAGGTTTTGCAAGCAAGAGGAGGGAAGGATTCCACATCAACTGTTATTGCAGGGACATATGGTTACTTAGCACCAGAATATGCATATTCATCTAGAGCAACAACCAAGTGTGATGTCTACAGTTTTGGGGTGATTTTAATGGAACTGATAACTGGGAAGAAGCCTGTGGATGCAGAATTTGGAGAGAACAGGAATATCGTATATTGGGTTTCAAACAAAGTGGAAAGCAAGGAAGGAGCTAGTGAGGTATTCGACAAGCGATTAGTAGGGTCATTCGAGGAGGACATAAAAAAGGTGATTCGAATTGCCATCCGCTGCACCTATAAGGCTCCAACTCTTCGGCCAACCATGAAAGAGGTAGTGCAGCTGCTGATTAAGGCAGAACCCAAATTCGATTCTTGCAAGTTGTCAAACAAGGCCAAAGAAATCTCAAATGTCCCCATAACAAAGAACCCGTTTGAATTATAG 2874 0.4332 MDHQSIFFLMGLIVSMSFIPQVISNRQSQFLTLMKESLAGNYPLDWDVTGGKHVCNFTGVSCNNQGDVINLDVSSWSLSGNFPSDVCSYLPALRVLRLGHNRLRGKFPESIINCSHLEELNMNHIYYTGSLPDFSPMKSLRILDLSYNYFTGPFPMSVFNLTNIEVLNFNENGGFNFWELPEDMYRLKNLKSVILTTCMVRGRIPASIGNVSSLADLELSGNYLTGQIPVELGLLKNLQQLELYYNQLVGNIPEEMGNLTELRDLDMSVNKLTGRLTESICGLPKLEVLQLYNNSLTGEIPGVIANSTTLRILSLYDNFLSGEVPIKLGQLSGMVVLDLSENKLSGPLPTEVCKGGKLLYFLVLDNKFSGEIPHSYATCWTLLRFRVSNNYLMGSIPEGLLGLPHVSIIDLSYNNLTGPISERIGNPRNLSELFMQRNRISGVIPPTISRATNLVKIDFSNNLLSGPIPSEIGNLKKLNLLMLQGNKLNSFIPSSLSLLKSLNVLDLSNNLLTGSIPESLSDLLPNSINFSNNLLSGPIPFSLIKGGLVESFSGNPGLCVVSVYANSSDQNFPLCSKPCNRKRINTFWVAGISVVLIITGAVLFLKRRCSKERAAVEHDETLSSSFFSYDVKSFHRITIDQREIMEGMVEKNIVGHGGSGTVYKIVLKSGDFVAVKRLWSRKSKDSAPEDRLVLDKTLKTEVETLGNIRHKNIVKLYCYFSSLDCSLLVYEYMTNGNLWDALHKSSIHLDWPTRHKIALGTAQGLAYLHHDLLPPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGGKDSTSTVIAGTYGYLAPEYAYSSRATTKCDVYSFGVILMELITGKKPVDAEFGENRNIVYWVSNKVESKEGASEVFDKRLVGSFEEDIKKVIRIAIRCTYKAPTLRPTMKEVVQLLIKAEPKFDSCKLSNKAKEISNVPITKNPFEL 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0925 957 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 186 927 - -
Glsi10g0925 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672|GO:0006468
Glsi10g0925 957 ProSitePatterns Protein kinases ATP-binding region signature. 654 676 IPR017441 GO:0005524
Glsi10g0925 957 FunFam Receptor protein-tyrosine kinase CEPR1 283 569 - -
Glsi10g0925 957 FunFam Leucine-rich repeat receptor-like protein kinase 178 279 - -
Glsi10g0925 957 Gene3D Ribonuclease Inhibitor 24 305 IPR032675 -
Glsi10g0925 957 PRINTS Leucine-rich repeat signature 334 347 - -
Glsi10g0925 957 PRINTS Leucine-rich repeat signature 499 512 - -
Glsi10g0925 957 ProSiteProfiles Leucine-rich repeat profile. 501 524 IPR001611 GO:0005515
Glsi10g0925 957 Gene3D Ribonuclease Inhibitor 306 569 IPR032675 -
Glsi10g0925 957 FunFam receptor protein-tyrosine kinase CEPR1 631 732 - -
Glsi10g0925 957 SMART LRR_sd22_2 499 522 - -
Glsi10g0925 957 SMART LRR_sd22_2 451 477 - -
Glsi10g0925 957 SMART LRR_sd22_2 235 254 - -
Glsi10g0925 957 SMART LRR_sd22_2 259 285 - -
Glsi10g0925 957 SMART LRR_sd22_2 90 116 - -
Glsi10g0925 957 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 733 944 - -
Glsi10g0925 957 SUPERFAMILY Protein kinase-like (PK-like) 636 926 IPR011009 -
Glsi10g0925 957 Gene3D Transferase(Phosphotransferase) domain 1 733 948 - -
Glsi10g0925 957 SUPERFAMILY L domain-like 252 566 - -
Glsi10g0925 957 Gene3D Phosphorylase Kinase; domain 1 631 732 - -
Glsi10g0925 957 SMART serkin_6 648 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0925 957 SMART LRR_typ_2 161 187 IPR003591 -
Glsi10g0925 957 SMART LRR_typ_2 475 498 IPR003591 -
Glsi10g0925 957 SMART LRR_typ_2 403 427 IPR003591 -
Glsi10g0925 957 SMART LRR_typ_2 235 259 IPR003591 -
Glsi10g0925 957 SMART LRR_typ_2 499 523 IPR003591 -
Glsi10g0925 957 SMART LRR_typ_2 90 114 IPR003591 -
Glsi10g0925 957 SMART LRR_typ_2 331 355 IPR003591 -
Glsi10g0925 957 SMART LRR_typ_2 283 306 IPR003591 -
Glsi10g0925 957 SUPERFAMILY L domain-like 62 349 - -
Glsi10g0925 957 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 25 177 - -
Glsi10g0925 957 ProSiteProfiles Protein kinase domain profile. 648 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0925 957 Pfam Protein kinase domain 650 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0925 Glsi-ChrGlsi10 5998169 6001248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0925 24 932 Receptor kinase-like Gene Family AT5G49660 66.740 0.0 1241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi10g0925 Pkinase 2.6e-48 CL0016