Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0906 ATGGCGATTGCAACAGAGATCCAACCTCAATCCCAAGACAAGGCTTCTTCAGAGGTTTCAGCTGTGGAGAATAGAAGGTGGACCCTAAACGATTTTGACATTGGAAAACCCCTAGGAAGGGGAAAATTTGGTCATGTCTATTTGGCCAGAGAAAAGAGAAGTAATCATATTGTTGCTCTGAAAGTCCTCTTTAAAAGCCAATTGCAACAGTCCCAAGTTGAGCATCAGCTAAGGCGAGAAGTTGAAATCCAAAGTCATCTGCGACATCCCAACATCTTACGCCTTTATGGATACTTCTATGATCAGAAACGAGTTTATTTGATCTTAGAGTATGCACCCAAAGGTGAGCTTTACAAGGAATTACAGAAATGCAAATATTTCAGCGAAAGACGTGCAGCTACTTACGTTGCATCATTGGCCCGCGCCCTCATATATTGCCACGGAAAGCATGTAATACATAGGGACATTAAACCTGAGAACCTTCTCATTGGTGCACAGGGTGAACTGAAGATAGCAGACTTTGGGTGGTCAGTGCACACATTTAATCGCAGGCGGACCATGTGTGGGACATTGGATTACCTCCCCCCTGAGATGGTGGAGAGCGTAGAACATGATGCAAGTGTTGATATATGGAGTCTTGGTGTCCTGTGTTATGAGTTTCTCTACGGAGTCCCTCCTTTTGAGGCTAAAGAACATTCCGAGACATATAGAAGGATTATCCAAGTGGATCTCAAGTTCCCTCCCAAACCAATTGTCTCTTCTGCTGCGAAGGACCTCATCAGTCAGATGCTGATCAAGGATACCTCTCACCGTCTACCATTGCACAAACTTCTGGAACATCCTTGGATTGTTCAGAACGCAGAGCCCTCTGGTGTATACAAGTGCTAG 888 0.4471 MAIATEIQPQSQDKASSEVSAVENRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSETYRRIIQVDLKFPPKPIVSSAAKDLISQMLIKDTSHRLPLHKLLEHPWIVQNAEPSGVYKC 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0906 295 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Glsi10g0906 295 CDD STKc_Aurora 31 284 - -
Glsi10g0906 295 Pfam Protein kinase domain 34 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0906 295 ProSiteProfiles Protein kinase domain profile. 32 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0906 295 SUPERFAMILY Protein kinase-like (PK-like) 20 287 IPR011009 -
Glsi10g0906 295 FunFam serine/threonine-protein kinase Aurora-1 116 291 - -
Glsi10g0906 295 PIRSF ILK 3 285 - -
Glsi10g0906 295 FunFam Aurora kinase A 24 115 - -
Glsi10g0906 295 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Glsi10g0906 295 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 11 293 IPR030616 GO:0004672
Glsi10g0906 295 SMART serkin_6 32 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0906 295 Gene3D Phosphorylase Kinase; domain 1 20 115 - -
Glsi10g0906 295 Gene3D Transferase(Phosphotransferase) domain 1 116 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0906 Glsi-ChrGlsi10 5856490 5859164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0906 23 294 CBL-interacting serine-threonine protein kinases AT5G10930 35.484 4.77e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Glsi10g0906 Pkinase 1.4e-73 CL0016