Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0893 ATGCCTGAACTGCGTAGCAGGGTACGCAGAAACCGGGCATTACATAATCCAAACCCAAACCCAGACCCAAATCCCAATCCGATTACCCATTCCCAGCCCCCACAACAACCCAATAAGCCCACGCTAAGAACTCGCCAGAGGAGGAGAACTACCGCTCACCATACAAGGATTCGCAAGCAGAAGAACACGATCGGAGCCGATGAAACAAATATTCTTGTAAATAAAGACAACGAAGAAGGGAAACAACAAGGACAAGCGCCACACGCACCGCTTAGGGTTTTCATAGAGGAAGTTGGGGATAAAGCCATGGATGAGTTCGACAGTGGTGGTCGAAGCGCCGATAAGGCTCCTGCTGCCGAAGATGAGGGCAGCACAGCTCCTCTACCCGAGAAGATCCAGGTTGGTGGTTCACCAGTATACAGAATTGATCGAAAACTGGGGAAAGGAGGATTTGGACAAGTCTACGTTGGTAGGCGTGTTGGAGCAACAAATTCTAGTGAACGAACTGGCCCTGGAGCCATAGAGGTAGCCTTAAAGTTTGAGCATAGAAGCAGTAAAGGGTGCAACTATGGACCACCGTATGAGTGGCAGGTTTACAATGCATTGGGTGGTAGTCACGGTGTTCCACGAGTTCATTACAAGGGGCGGCAAGGTGATTACTATATCATGGTAATGGATATGCTTGGCCCTAGTCTATGGGATGTGTGGAATAATAACTCACATTCGATGTCTACAGAAATGGTTGCTTGTATTGCAATTGAGGCAATCTCCATATTAGAGAAGATGCATTCTAGAGGATATGTGCACGGTGATGTAAAACCTGAGAACTTTTTGCTTGGCCCCCCTGGAAGTCCTGATGAGAAAAAGCTTTTTCTTGTTGATCTTGGATTAGCTACAAGGTGGCGTGATAATTCAACCGGCCTTCATGTGGAGTATGATCAACGCCCAGATGTATTTAGGGGGACAGTACGATACGCTAGTGTGCATGCTCATCTTGGTAGAACAGGTAGCAGAAGAGATGACTTGGAATCTCTTGCTTACACGCTTATCTTCCTTCTTCGTGGCCGGCTACCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAAATGGCAACTTCCCCTGAAACTTTGTGTTGCTTTTGTCCTTTACCTTTCCGGCAGTTTGTTGAGTATGTGGTGAACTTGAAGTTTGATGAAGAACCTAATTATGCGAAGTATATATCCCTTTTTGATGGAATTATTGGTCCAAATCCAGACATCAGGCCGATAAACACTGAGGGCGCTCAGAAACTTATATGCCAGGTTGGACATAAGAGAGGACGATTGACCATGGAAGAGGATGATGATGAACAACCAAAGAAGAAGGTCAGAATGGGAATGCCAGCAACACAATGGATTAGTGTTTACAATGCCCGCCGACCAATGAAGCAAAGGTATCATTACAATGTTGCAGATGTGCGGCTGTCCCAACACATTGAGAAAGGAAATGACGATGGGTTATTTATCAGCAGTGTGGCTTCTTGTTCCAATCTTTGGGCACTTATTATGGATGCTGGCACGGGTTTCACTGCACAAGTTTATGAACTCTCACCCTTTTTTCTTCCAAAGGAATGGATTATGGAACAGTGGGAAAAAAATTATTACATCAGTGCCATAGCTGGGGCTACTAATGGAAGCTCATTGGTTGTAATGTCTAAGGGGACTCAGTACCTACAGCAGTCCTATAAAGTTAGTGATTCATTTCCATTCAAATGGATTAATAAAAAATGGAGAGAAGGGTTTTATGTCACTGCCATGGCTACTGCTGGAAGTAGATGGGCAATTGTGATGTCCCGTGGTGCAGGATTTTCGGACCAGGTTGTGGAACTTGATTTCTTGTATCCAAGTGAAGGTATTCATCGAAGGTGGGATGGCGGTTACCGCATCACATCAACTGCTGCAACATGGGACCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCAGCTGATGAAACTCAAGAAACACTCCGTACATCTGCTTTCCCTAGTACACATGTCAAGGAAAAATGGGCCAAGAACTTGTATATTGCATCTATTTGTTATGGGAGAACATGGAAAGCCTTGTACTTATATCCTTTTATCCCTTCATCTCTTGACTTAAAGCTACTTCTGGCCACATGGATGTCTGAAATTGACCTTAATGACAGAAAGCATTTGTATACTCTGGAAGCAGATGCTGTTTTGATTCTGACAAGCAGTTGGCAATTTGAACTGAGATCTGTTCATGTTGGTTCAAAATCACACACTATGATGCTGGACCAAGCCATTTAG 2334 0.4439 MPELRSRVRRNRALHNPNPNPDPNPNPITHSQPPQQPNKPTLRTRQRRRTTAHHTRIRKQKNTIGADETNILVNKDNEEGKQQGQAPHAPLRVFIEEVGDKAMDEFDSGGRSADKAPAAEDEGSTAPLPEKIQVGGSPVYRIDRKLGKGGFGQVYVGRRVGATNSSERTGPGAIEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSHSMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGSPDEKKLFLVDLGLATRWRDNSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPLPFRQFVEYVVNLKFDEEPNYAKYISLFDGIIGPNPDIRPINTEGAQKLICQVGHKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLSQHIEKGNDDGLFISSVASCSNLWALIMDAGTGFTAQVYELSPFFLPKEWIMEQWEKNYYISAIAGATNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDGGYRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTWKALYLYPFIPSSLDLKLLLATWMSEIDLNDRKHLYTLEADAVLILTSSWQFELRSVHVGSKSHTMMLDQAI 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0893 777 Gene3D Transferase(Phosphotransferase) domain 1 108 463 - -
Glsi10g0893 777 CDD STKc_CK1 140 416 - -
Glsi10g0893 777 MobiDBLite consensus disorder prediction 42 59 - -
Glsi10g0893 777 MobiDBLite consensus disorder prediction 18 34 - -
Glsi10g0893 777 SMART serkin_6 140 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0893 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Glsi10g0893 777 MobiDBLite consensus disorder prediction 104 118 - -
Glsi10g0893 777 FunFam casein kinase 1-like protein HD16 113 463 - -
Glsi10g0893 777 PANTHER CASEIN KINASE-RELATED 140 673 - -
Glsi10g0893 777 MobiDBLite consensus disorder prediction 104 132 - -
Glsi10g0893 777 ProSiteProfiles Protein kinase domain profile. 140 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0893 777 SUPERFAMILY Protein kinase-like (PK-like) 140 422 IPR011009 -
Glsi10g0893 777 MobiDBLite consensus disorder prediction 1 71 - -
Glsi10g0893 777 Pfam Protein kinase domain 140 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0893 777 ProSitePatterns Protein kinases ATP-binding region signature. 146 179 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0893 Glsi-ChrGlsi10 5752464 5758876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0893 11 298 EF-hand Containing Proteins AT2G17890 23.948 2.57e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Glsi10g0893 Pkinase 1.2e-15 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1401 08 10242331 10248719 Glsi10g0893 10 5752464 5758876 CCT