Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0888 ATGGCCAAAGGAGTTCAAACTTTAACTAACTTCCTCACGTCTATGTGCTTCTTCATGTTCATGATCAACTTCCATTCATCCCATGGGGAAGAACTAGAGCTTTTGCTGTCCTTCAAGGCTTCCATCAACGACCCACTTCACTTTCTCTCCAACTGGGTCAATTCCTCTTCCACTGCCTGCCAGTGGTATGGCATCACCTGCGATGGCAACTCCCACGTCAGTGCCATCGAGCTCTCTGGCAAAAACATCTCCGGCAATATTTCCTTGTCCATATTTCAACTGCCATACGTTAAAGACATGGACCTCTCTAACAATCAGCTCTCTGGGGAAATCACTTTAAAGATTCTCTCTGCCTCGTCACTTCGGTATCTCAATCTTAGCAACAACAATTTAACGGGTTCGTTGCCACAAAGTTTGCTTTCCGAGTCGTTTTCCCACATGCAAACACTCGATCTCTCAAACAACATGTTTTCCGGGAAAATACCAGACCAAATTGGATTGCTTTCAAGTCTAAGGTATCTTGATCTGGGAGGAAACGTTTTGGTGGGAAAAATTCCAAATTCCATCACCAACATAACAAGTTTACAGTACCTGACCTTGGCTTCGAACCAGCTAGTGGGTGAAATCCCTCAAAACATAGGCCTAATGAAGAGCTTGAAGTGGATTTACTTAGGGTACAACAACCTCTCAGGTGAGATTCCAAAGGGCGTTGGAGAATTGATCTCTTTGAATCATCTTGACCTTGTTTACAACAATCTCACTGGATCCATTCCCAAGTCTCTTGGCAACCTCACCGATCTTCAGTATCTCTTTCTCTACCAAAACAAGCTAACGGGCCCAATTCCCCCCTCCATTTTTGAGCTAAAAAAGCTTGTTTCGCTTGATCTCAGCGATAATTTTCTTTCGGGTGGGATTCCCGAGCTTGTGATTCAACTCCAGAGATTAGAGATTCTTCATCTTTTCTCAAACAACTTAACTGGAAAGGTTCCAAATGCTTTGACCTCTCTGCCTCGCCTTCAAGTCCTTCAGCTATGGTCAAACACACTAACAGGTGAGATTCCAAAAGAGCTCGGAAAGCATAACAATCTCACTGTTTTGGACCTTTCCACCAACAACCTTTCCGGGAAAATCCCAGATAGCTTATGCCACTCCGGCACTCTTTACAAGCTTATCCTTTTCTCGAACTCACTGGAAGGACAAATCCCAAATAGCTTAAGCTCTTGCAGAAGCTTACGCCGAATTCGTCTTCAAAACAATAAGCTTTCTGGTGAATTGCCGTCACAACTAACGAAACTGTCACAGGTATACTTTTTGGATATCTCCAGCAATGAACTCTCCGGCAGGATCGACAATAGGACATGGGATATGCCGGCGCTTCAAATGCTGAATTTGGCTAACAACAACTTATCCGGAGAGTTACCAAGCTCTTTTGGGAGTAAGAAAATGGAGAGGTTGGACTTGTCCGAAAATCGATTTTCGGGTTACATTCCAACTGGGTATGGAAGATTATCAGAGCTCATGCAATTGAAACTAAGTAATAACAATCTCTCCGGTAATATCCCAGAAGAGCTCTCTTTCTGCCAGAAGCTAGTCGCTTTAGATCTCAGCCACAATCAGCTTAGTGGGCAAATTCCCATCAGTCTTGCCAATATGCCGGTTCTCAGCCTGCTTGATTTGTCCGAAAACCAATTGTGTGGTGGAATTCCGCAGAGTTTAGGAAGAATGGAATCTCTTGTTCAGGTAAACATATCCCACAACCATTTTCATGGACATTTACCGTCCACTGGAGCTTTCCTTGCCATTAATGCAAGTGCAATCGCCGGCAACGACCTGTGTGACCGTGCCACCGGTACTTCAAGCGGTTTGCCCCCATGCAAAAGAGATAAGAATCCAAGTTGGTGGTTTGTTCTGTTATGTTTCGTAGTGGGAATAGCTGCCTTGGCTTTGGCAGCTTTTCTCATTGTTTTTGTGCGTACAAGAAAGAATTTGGAGCTGCAGAGAGTAGAAAGTGAAGATGGGACTTGGGAAATGCAATTCTTTGATTCCAAGACCGCTAAATTGATCACTATGGACGATGTTTTGTCGTCAGCAAAAGAAGGAAATGTCATTTCCAAAGGAAAGAACTGGGTTTCATACGAAGGAAAGTGCATGGCAAATGACATGCAATTCATTGTGAAAGAAATTAGTGACCTAAATTCAATTCCATTGAGTTTTTGGGAAGACGTGGTGGAGTTGGGTAAGCTTCGGCATCCAAATATCGTGAAATTGATGGGAATATGCAAGTCTGGTAAGGGAGCGTACTTAGTGTATGAGTATGCTGAGGGAAAGAATTTGAGGGATGTTTTAAGGAATTTGAGCTGGGAAAAGCGACGAAAAATTGCCATGGGGATTGCAAAAGCACTAAAGTTTCTGCACGCTCAATGTTCAAATATTGTTTTGGTTGGCGAGATGTCGCCGGAGAAAGTTTTCGTGGACGGGACTGATGTACCTCGCCTGATGTCGAGCCCTCCCGGAATAGTGTATACAGATGTTAAGGGTTTCATTTCTTCAGCCTACGTTGCCCCGGAAGCAAGAAATAGCGAAGAGGTGACAGAGAAGTGCGAGATATACGGATTTGGCCTTATTCTAATCGAATTATTGACGGGAAGAAGTCCGGTGGACGCAGAACTGGGCATGCACGAGAGCATCGTAGAGTGGGCCCGGTATTGCTATTCGGACTGTCATTTGGATACGTGGGTCGACCCGACGATAAAGGGCGGGTATGCATCGAGCTGTCACAACGACATGGTTGAGACAATGAACCTCGCCCTGCACTGCACCGCCACAGATCCCTCGGCAAGGCCATGCGCAAGCGACGTATTCAAAACCCTATATGCTGTTCCTTGCAGACCCACTGTTTCCTGTGTCTCTGCACCAAAATCCTAA 2925 0.4485 MAKGVQTLTNFLTSMCFFMFMINFHSSHGEELELLLSFKASINDPLHFLSNWVNSSSTACQWYGITCDGNSHVSAIELSGKNISGNISLSIFQLPYVKDMDLSNNQLSGEITLKILSASSLRYLNLSNNNLTGSLPQSLLSESFSHMQTLDLSNNMFSGKIPDQIGLLSSLRYLDLGGNVLVGKIPNSITNITSLQYLTLASNQLVGEIPQNIGLMKSLKWIYLGYNNLSGEIPKGVGELISLNHLDLVYNNLTGSIPKSLGNLTDLQYLFLYQNKLTGPIPPSIFELKKLVSLDLSDNFLSGGIPELVIQLQRLEILHLFSNNLTGKVPNALTSLPRLQVLQLWSNTLTGEIPKELGKHNNLTVLDLSTNNLSGKIPDSLCHSGTLYKLILFSNSLEGQIPNSLSSCRSLRRIRLQNNKLSGELPSQLTKLSQVYFLDISSNELSGRIDNRTWDMPALQMLNLANNNLSGELPSSFGSKKMERLDLSENRFSGYIPTGYGRLSELMQLKLSNNNLSGNIPEELSFCQKLVALDLSHNQLSGQIPISLANMPVLSLLDLSENQLCGGIPQSLGRMESLVQVNISHNHFHGHLPSTGAFLAINASAIAGNDLCDRATGTSSGLPPCKRDKNPSWWFVLLCFVVGIAALALAAFLIVFVRTRKNLELQRVESEDGTWEMQFFDSKTAKLITMDDVLSSAKEGNVISKGKNWVSYEGKCMANDMQFIVKEISDLNSIPLSFWEDVVELGKLRHPNIVKLMGICKSGKGAYLVYEYAEGKNLRDVLRNLSWEKRRKIAMGIAKALKFLHAQCSNIVLVGEMSPEKVFVDGTDVPRLMSSPPGIVYTDVKGFISSAYVAPEARNSEEVTEKCEIYGFGLILIELLTGRSPVDAELGMHESIVEWARYCYSDCHLDTWVDPTIKGGYASSCHNDMVETMNLALHCTATDPSARPCASDVFKTLYAVPCRPTVSCVSAPKS 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0888 974 Gene3D Ribonuclease Inhibitor 239 312 IPR032675 -
Glsi10g0888 974 PRINTS Leucine-rich repeat signature 530 543 - -
Glsi10g0888 974 PRINTS Leucine-rich repeat signature 551 564 - -
Glsi10g0888 974 ProSiteProfiles Protein kinase domain profile. 697 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0888 974 SUPERFAMILY L domain-like 52 260 - -
Glsi10g0888 974 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 145 234 - -
Glsi10g0888 974 Gene3D Ribonuclease Inhibitor 313 632 IPR032675 -
Glsi10g0888 974 Gene3D Ribonuclease Inhibitor 183 238 IPR032675 -
Glsi10g0888 974 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Glsi10g0888 974 SUPERFAMILY L domain-like 209 598 - -
Glsi10g0888 974 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 661 772 - -
Glsi10g0888 974 Pfam Leucine Rich Repeat 120 140 IPR001611 GO:0005515
Glsi10g0888 974 Pfam Leucine Rich Repeat 362 383 IPR001611 GO:0005515
Glsi10g0888 974 SUPERFAMILY Protein kinase-like (PK-like) 689 958 IPR011009 -
Glsi10g0888 974 SMART LRR_typ_2 456 479 IPR003591 -
Glsi10g0888 974 SMART LRR_typ_2 362 384 IPR003591 -
Glsi10g0888 974 SMART LRR_typ_2 192 216 IPR003591 -
Glsi10g0888 974 SMART LRR_typ_2 119 146 IPR003591 -
Glsi10g0888 974 SMART LRR_typ_2 551 575 IPR003591 -
Glsi10g0888 974 SMART LRR_typ_2 264 288 IPR003591 -
Glsi10g0888 974 SMART LRR_typ_2 503 527 IPR003591 -
Glsi10g0888 974 SMART LRR_typ_2 168 191 IPR003591 -
Glsi10g0888 974 SMART LRR_typ_2 312 335 IPR003591 -
Glsi10g0888 974 SMART LRR_typ_2 240 263 IPR003591 -
Glsi10g0888 974 SMART LRR_typ_2 336 360 IPR003591 -
Glsi10g0888 974 Gene3D Ribonuclease Inhibitor 28 182 IPR032675 -
Glsi10g0888 974 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 320 621 - -
Glsi10g0888 974 Pfam Protein kinase domain 705 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0888 974 Gene3D Transferase(Phosphotransferase) domain 1 774 964 - -
Glsi10g0888 974 Pfam Leucine rich repeat 482 540 IPR001611 GO:0005515
Glsi10g0888 974 Pfam Leucine rich repeat 146 205 IPR001611 GO:0005515
Glsi10g0888 974 Pfam Leucine rich repeat 242 299 IPR001611 GO:0005515
Glsi10g0888 974 Gene3D Phosphorylase Kinase; domain 1 661 772 - -
Glsi10g0888 974 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515
Glsi10g0888 974 FunFam Leucine-rich repeat receptor-like kinase 30 144 - -
Glsi10g0888 974 ProSiteProfiles Leucine-rich repeat profile. 362 384 IPR001611 GO:0005515
Glsi10g0888 974 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 357 482 IPR046959 -
Glsi10g0888 974 FunFam Leucine-rich repeat receptor protein kinase EMS1 235 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0888 Glsi-ChrGlsi10 5717434 5720475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0888 11 957 Receptor kinase-like Gene Family AT2G25790 54.470 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Glsi10g0888 Pkinase 9.4e-20 CL0016