Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0887 ATGATGGCGGTGAGTTCAGCCTGCAAAGACGGGAGCAAGGTGGCAATGGACAACGGCAAGTATGTGCGCTACACACCCGAGCAGGTCGATGCCCTCGAGAGGCTTTATCACGAATGCCCCAAACCCAGTTCCATTCGGCGTCAGCAGCTGATCAGAGAGTGCCCCATTCTCTCCAATATCGAGCCCAAGCAGATCAAGGTTTGGTTTCAAAATCGAAGATGTAGAGAGAAGCAGCGGAAAGAAGCTTCCCGCCTGCAAGCTGTAAACAGGAAGCTGACGGCAATGAATAAACTTCTGATGGAGGAAAACGACAGATTGCAAAAGCAGGTGTCACAGCTGGTTTACGAGAACGGCTTTTTCCGCCAGCAGACACAGAATGCGACTCTTGCAACCGCGGACACAAGTTGTGAGTCGGTGGTAACCAGCGGCCAGAACCATTTGACACCTCAGCATCCACCAAGGGATGCCAGCCCAGCTGGACTTCTGTCCATTGCAGAGGAGACTCTAGCAGAGTTTCTTTCGAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCATTGCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCCTGTGGGCTTGTGGGTCTGGAACCTACGAGGGTTGCTGAAATCCTCAAAGATCGGTCCTCATGGTTTCGTGATTGCCGAGCTGTGGATGTTCTAAATGTGATGCCCACTGGAAATGGTGGAACCATTGAACTGCTTTACATGCAGTTGTATGCGCCAACAACTTTGGCACCAGCTCGGGACTTCTGGTTGCTGCGCTACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCGCTTAACAACACTCAGAATGGTCCTGCTATGCCACCAGCGCAGCACTTTGTTAGAGCAGACATGCTGCCAAGCGGGTATCTTATTAGAACTTGTGAAGGAGGTGGATCCATCATTCATATTGTTGATCACATGAATTTAGAGCCTTGGAGTGTACCCGAAGTGCTACGCCCACTTTATGAGTCATCAGTGTTGCTTGCTCAAAAGACAGTTATGGCGGCTTTAAGTCATTTGAGGCAGATTTCTCAAGAAGTTTCTCAGCCAAATGTCACAGGATGGGGAAGAAGGCCTGCAGCTCTAAGAGCACTTAGTCAGCGGTTGAGCAAGGGCTTCAATGAAGCTGTCAATGGGTTTGCAGATGATGGTTGGTCCATGTTAGAAAGCGATGGCATTGATGATGTCACCCTTCTCGTGAATTCATCTCCTAGCAGGATGATGGGAGCAAATCTTGGTTATAACAATGGGTACTTATCGATGAGCAGTTCCGTGCTATGTGCAAAAGCATCAATGTTGTTACAGAATGTCCCTCCAGCAATTCTTCTTAGATTCTTGCGGGAGCACCGATCAGAGTGGGCAGACAGCAGTATAGATGCGTACACTGCCACTGCCATCAAAGCCGGTCCCTGTACCTTGGCAGGGGTCCGAGCTGGAGGTTTTGGGGGTCAGGTTATTCTTCCACTGGCTCACACGATTGAGCATGAAGAGTTTATGGAGGTCATTAAGCTTGAAAACATGGGATACTATAGAGATGACATGACTATTCCTGGAGATATTTTCCTCTTGCAACTTTGTAGCGGAGTAGATGAGCGTGCAGTAGGCACCTGTGCAGAACTCATTTTTGCTCCCATTGATGCATCTTTCTCTGACGATGCACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCAGGCGTGGATGCTGCTAGTCCAAACCGTACACTTGATCTTGCTTCTGCTCTTGAAGTTGGAACCACGGGAAACAAATCAGCTGGTGACAGTTTTGGTCATTCTGGAAGCACAAAATCTGTTATGACAATAGCATTCCAGTTTGCATTTGAAGTCCACCTTCAAGATAATGTGGCAACTATGGCCCGGCAGTATGTCCGCAGTATTATTGCATCTGTTCAGAGGGTTGCATTAGCACTCTCCCCTTCATGTTTTGGTTCTCACAATGGCTTTCGCTCATCACCTGGCACTCCTGAGGCACAAACACTTGCTCAGTGGATCTGTAATAGCTATAGGTGCTATCTTGGGGCAGAACTGCTGAAATGCGAAGGCAATGAATCCATTCTCAATTCCCTTTGGCATCACTCCGATGCAGTCTTGTGCTGTTCTTTAAAGGCATTGCCAGTTTTTACATTTGCAAATCAAGCTGGACTCGACATGCTTGAGACGACCTTGGTTGCTCTTCAAGACATCACTCTCGATAAAATTTTTGACGACAATGGAAAGAAAACCCTGTTTTCTGAGTTCCCCCACGTAATGCAGCAGGGTTTTATGTGTATTGAAGGTGGAATCTGTTTGTCCAGCATGGGAAGGCCAGTGTCATATGAGAGAGCAGTGGCATGGAAGGTATTGAACGAAGAAGAAACGGCTCATTGCATCTGTTTTATGTTCATAAACTGGTCTTTCGTCTGA 2520 0.479 MMAVSSACKDGSKVAMDNGKYVRYTPEQVDALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGFFRQQTQNATLATADTSCESVVTSGQNHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCPGVAARACGLVGLEPTRVAEILKDRSSWFRDCRAVDVLNVMPTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPAMPPAQHFVRADMLPSGYLIRTCEGGGSIIHIVDHMNLEPWSVPEVLRPLYESSVLLAQKTVMAALSHLRQISQEVSQPNVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSRMMGANLGYNNGYLSMSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYTATAIKAGPCTLAGVRAGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTIPGDIFLLQLCSGVDERAVGTCAELIFAPIDASFSDDAPILPSGFRIIPLDSGVDAASPNRTLDLASALEVGTTGNKSAGDSFGHSGSTKSVMTIAFQFAFEVHLQDNVATMARQYVRSIIASVQRVALALSPSCFGSHNGFRSSPGTPEAQTLAQWICNSYRCYLGAELLKCEGNESILNSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLDKIFDDNGKKTLFSEFPHVMQQGFMCIEGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0887 839 CDD bZIP 72 111 - -
Glsi10g0887 839 Gene3D - 11 86 - -
Glsi10g0887 839 Coils Coil 75 116 - -
Glsi10g0887 839 SMART HOX_1 17 83 IPR001356 GO:0003677
Glsi10g0887 839 Gene3D - 199 379 IPR023393 -
Glsi10g0887 839 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Glsi10g0887 839 ProSiteProfiles START domain profile. 154 356 IPR002913 GO:0008289
Glsi10g0887 839 SMART START_1 163 373 IPR002913 GO:0008289
Glsi10g0887 839 CDD START_ArGLABRA2_like 158 373 - -
Glsi10g0887 839 Pfam START domain 164 372 IPR002913 GO:0008289
Glsi10g0887 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 839 IPR044830 GO:0003700
Glsi10g0887 839 Pfam MEKHLA domain 698 838 IPR013978 -
Glsi10g0887 839 SUPERFAMILY Homeodomain-like 19 83 IPR009057 -
Glsi10g0887 839 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Glsi10g0887 839 SUPERFAMILY Bet v1-like 163 374 - -
Glsi10g0887 839 CDD homeodomain 20 80 IPR001356 GO:0003677
Glsi10g0887 839 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0887 Glsi-ChrGlsi10 5705735 5712449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0887 16 839 Homeobox Transcription Factor Family AT4G32880 80.482 0.0 1399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi10g0887 START 1.5e-51 CL0209