Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi10g0886 | ATGGAAGCACCCGAGTTTTTCCAAAGCGCCTTTTGCACACAATTCTCCTCCGATAACAATACCACCACGGGCGCTGCCGTTCCCGACCATTTCATTGTCGAGGACCTCCTTGACTTCTCCAACGATGACGCCATCATTACGGACGCCAACTTTGACTCTGTTCCCGGCAACTCTACCGATTCTTCCACTCTAAACGCCGTTGACAGCAGCAATTCCTCTTCTTTCTCTGGGTGCGACCCCAATTTCGTGGTCGATATTGGGTCCCGAAATTTACCCGACGGCCATTTCTCCAGTGACCTCTGCGTCCCGTGTGATGATCTGGCGGAGCTGGAATGGCTTTCCAATATCGTGGAGGAATCATTTTCCAGCGAGGACCTGCAGAAGCTGCAGCTCATATCCGGCATGAAAGCCCGAAACGACGAAACATTAGAAAGCCGTGAATTCCAGCACGAACCCAACCGGAACCACATCATATTCAACCCCGAAGTGTCGGTTCCAGCCAAGGCTCGCAGCAAGCGCTCCCGAGGCGCTCCATGCAATTGGACCTCTCGCCTTCTCGTCCTCTCTCCCACCTCATCCTCTTCCGACCCTGACGTCATCCTTCCCACCCCTGCTGCAAACCCCGGAAAGAAACTGGGCAAGTCGGATCCGAGGAAGAAGGACAGCGGCGATGGCTCCGGGGGAGAGTCCGGTGACGGACGCAAGTGCTTGCATTGCGCAACGGATAAGACGCCGCAATGGCGGACTGGACCCATGGGACCGAAAACGCTTTGCAATGCTTGTGGCGTGAGGTACAAGTCCGGCCGGTTAGTGCCGGAGTACCGGCCCGCAGCGAGCCCCACATTTGTGCTGACGAAGCATTCAAACTCACACCGGAAGGTGCTGGAGCTCCGTCGCCAGAAGGAAATGCTGAAGGCGCAGCAGCAACAACAACAGTTTCTGCAACATCAAAACATGACGTTTGATGTGTCCAACGGTGACGATTACTTGATCCATCAACACGTGGGCCCCGATTTCAGGCAGCTGATCTAG | 1032 | 0.5523 | MEAPEFFQSAFCTQFSSDNNTTTGAAVPDHFIVEDLLDFSNDDAIITDANFDSVPGNSTDSSTLNAVDSSNSSSFSGCDPNFVVDIGSRNLPDGHFSSDLCVPCDDLAELEWLSNIVEESFSSEDLQKLQLISGMKARNDETLESREFQHEPNRNHIIFNPEVSVPAKARSKRSRGAPCNWTSRLLVLSPTSSSSDPDVILPTPAANPGKKLGKSDPRKKDSGDGSGGESGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLKAQQQQQQFLQHQNMTFDVSNGDDYLIHQHVGPDFRQLI | 343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi10g0886 | 343 | SMART | GATA_3 | 230 | 280 | IPR000679 | GO:0006355|GO:0043565 | |
| Glsi10g0886 | 343 | CDD | ZnF_GATA | 235 | 282 | IPR000679 | GO:0006355|GO:0043565 | |
| Glsi10g0886 | 343 | FunFam | GATA transcription factor | 227 | 312 | - | - | |
| Glsi10g0886 | 343 | ProSitePatterns | GATA-type zinc finger domain. | 236 | 261 | IPR000679 | GO:0006355|GO:0043565 | |
| Glsi10g0886 | 343 | ProSiteProfiles | GATA-type zinc finger domain profile. | 230 | 266 | IPR000679 | GO:0006355|GO:0043565 | |
| Glsi10g0886 | 343 | PANTHER | GATA TRANSCRIPTION FACTOR | 21 | 311 | - | - | |
| Glsi10g0886 | 343 | Gene3D | - | 230 | 280 | IPR013088 | GO:0006355|GO:0008270 | |
| Glsi10g0886 | 343 | Pfam | GATA zinc finger | 236 | 269 | IPR000679 | GO:0006355|GO:0043565 | |
| Glsi10g0886 | 343 | MobiDBLite | consensus disorder prediction | 212 | 228 | - | - | |
| Glsi10g0886 | 343 | MobiDBLite | consensus disorder prediction | 190 | 237 | - | - | |
| Glsi10g0886 | 343 | Coils | Coil | 297 | 317 | - | - | |
| Glsi10g0886 | 343 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 232 | 294 | - | - | |
| Glsi10g0886 | 343 | PIRSF | Txn_fac_GATA_plant | 12 | 326 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi10g0886 | Glsi-ChrGlsi10 | 5697611 | 5699139 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi10g0886 | 25 | 343 | C2C2-Gata Transcription Factor Family | AT4G32890 | 51.940 | 2.38e-97 | 289 |
Transcription factors information