Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0878 ATGCCAGCAGCAATGTCCCAACACCCCCAAACCCAACCTATCCATTTAAGCAAAGAGATGGTAATAGTGTTCCTCTCCATAATGTTCTTGATAACATTTCTACTACTTGCCTATGTAAAGTGCTGCGGAATCAACCCTTTTGAACTTCTGCGCAGAGATATCCATCACCAGAATTTTCCTAGACTTTCTGGGATTGACAAACAAGTAATCGAAGCACTCCCCGTCTTCAAGTACAGGGTTGACCCAGGGGACATCAAGAGCTTCACTTCGTCTATCAGTTCAAGGTTCCTGCGAGTCCCTTCAAATTTAACGGATGACCCAAATCTTGATATCATTGTCCAGAGGGAGCAATCTCGTAAAGGGTCGTCAAGATTTAACCCTGGGAGCAGCTTATGGAACGTGGACAAGGGCTTGAGAGATGAACTGCTCATTGATAAACAAGGTGATGATGGCAATGGTAGAAATTGGGGTGTTCTGCACAAGTTCAATCACAAAATAGTCATCTCCGATTTTGTTACTAGGAGCAGGTGGAGTGATCTTAGCTCCACAGATCTACTATCCTTAAACTCTGAGATGCTCAATATTATTTCAAGCACTGGGTTCTGTTCTTTGGAATCCACCAACAATATAAGGTTGCACAGGAGTTCAAATCTTGCCTCTACTTCCAAGCAGGAAGAAAATTCATTTACGCGACTGAATTCTGCAGACAAGAGATCGGTGTCTGAGATTGCTAATGTTCCAAGGTTTGCGGAAATCAGCATGCACAACGGAATAAAAAAATTAGTAGCAGCTAGTGAGAACAATGAGAGGGAAGAGAGATTGGGGAGGATGTGGTTGCCAATTGCGCGGCGAACACTGCAATGCTCTCATGCCATGGATTTCTTTGGAAACAGATCTCTCCATAGCTTGATGGACAACGAAAATAAAGAACCGCAACCCCCCATTCACCTTAGTGTCCAAACCCATAGAGAGATAAGTGAACATGATGTTCAATTTAGCCCACCGAGACCTTCTAGCTCTGAAGGGGCTATGTTTACAACGATGCCGTCCCCGGGCCCAGAATCACCATGGACGCTTTCCCCTCACCCCACTCCTTCCCCTTCGCTGCTTTACTACTGCATCGCCTCGCTCCACCGCCACGATGGTAATATCTACGCAATCGCAGCTTCAAAGGGTTTAGTCTTTACCGGCTCTAACAGCACCAGAATTCGCGTATGGAAGCAACCGGATTGCATGGACAGAGGATATCTCAAGTCTAGCTCTGGCGAAGTCCGGGCCATTTTAGCTTATAGTAACATACTTTTCTCAACCCACAAGGACCACAAGATCCGAATATGGAACTTCACGGTTTCAGACACTTTCAAATCTAAAAAGGTTGCTACGCTTCCCAGAAAAAGCTCATTTTTTTTCTTCTCCAGAGCAAACAGTACTCCGCAACATAAAGACTGTGTTTCTTGCATGGCTTATTACCATTCAGAAGGGCTTTTATACACTGGCTCTCATGACAGAACAGTGAAAGCTTGGAGGGTTTCAGATAGAAAATGTGTGGACTCGTTTGTGGCACACGAAGATAACATAAATGCACTGTTGGTGAACCAAGACGACGGGTGTCTTTTCACCTGCTCCTCGGATGGGTCAGTGAAAATATGGAGAAGGGTATACACAGAAGACTCGCATACCCTCACAATGACTCTTAAATTCCAACCTTCGCCTGTCAATACAATGGCATTGAGCACATCCTTTAACCATTGCTTCCTCTACTCAGGGTCTTCAGATGGGATGATTAATTTCTGGGAGAAAGAGAGACTGTGTTATAGATTCAACCATGGAGGATTTTTGCAGGGTCACCGTTTTGCAGTTCTTTGCCTAGCAACAGTGGGAAACCTGATATTTAGTGGGTCGGAGGATACAACTATAAGGGTTTGGAGGAGAGAGGAAGGGAGTTGTTACCATGAATGCTTAGCAGTTTTAGATGGGCATAGAGGGCCAGTGAGATGTTTGGCGGCTTGCCTTGAGATGGAAAAGGCTGTGATGGGGTTTTTGGTGTACAGTGCTAGTTTGGACCAAACATTCAAGGTGTGGAGGGTTAAGGTTTTGCCTGATGAAAATATGTGCTTGGACTACACGGAGCAGCGGGAAGCGAGGAAGAGGATTACGGAGTATGATATGAGCCCAGTTTTGTCGCCTTCATGGGTGGAGAAGAAACTTCGAGGTAACTATTTTCAATAA 2229 0.4504 MPAAMSQHPQTQPIHLSKEMVIVFLSIMFLITFLLLAYVKCCGINPFELLRRDIHHQNFPRLSGIDKQVIEALPVFKYRVDPGDIKSFTSSISSRFLRVPSNLTDDPNLDIIVQREQSRKGSSRFNPGSSLWNVDKGLRDELLIDKQGDDGNGRNWGVLHKFNHKIVISDFVTRSRWSDLSSTDLLSLNSEMLNIISSTGFCSLESTNNIRLHRSSNLASTSKQEENSFTRLNSADKRSVSEIANVPRFAEISMHNGIKKLVAASENNEREERLGRMWLPIARRTLQCSHAMDFFGNRSLHSLMDNENKEPQPPIHLSVQTHREISEHDVQFSPPRPSSSEGAMFTTMPSPGPESPWTLSPHPTPSPSLLYYCIASLHRHDGNIYAIAASKGLVFTGSNSTRIRVWKQPDCMDRGYLKSSSGEVRAILAYSNILFSTHKDHKIRIWNFTVSDTFKSKKVATLPRKSSFFFFSRANSTPQHKDCVSCMAYYHSEGLLYTGSHDRTVKAWRVSDRKCVDSFVAHEDNINALLVNQDDGCLFTCSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNTMALSTSFNHCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCLATVGNLIFSGSEDTTIRVWRREEGSCYHECLAVLDGHRGPVRCLAACLEMEKAVMGFLVYSASLDQTFKVWRVKVLPDENMCLDYTEQREARKRITEYDMSPVLSPSWVEKKLRGNYFQ 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0878 742 CDD WD40 373 695 - -
Glsi10g0878 742 ProSiteProfiles Trp-Asp (WD) repeats profile. 613 652 IPR001680 GO:0005515
Glsi10g0878 742 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 340 698 IPR045182 -
Glsi10g0878 742 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 477 511 - -
Glsi10g0878 742 MobiDBLite consensus disorder prediction 332 346 - -
Glsi10g0878 742 Pfam WD domain, G-beta repeat 563 598 IPR001680 GO:0005515
Glsi10g0878 742 Pfam WD domain, G-beta repeat 652 694 IPR001680 GO:0005515
Glsi10g0878 742 Pfam WD domain, G-beta repeat 514 550 IPR001680 GO:0005515
Glsi10g0878 742 Pfam WD domain, G-beta repeat 479 508 IPR001680 GO:0005515
Glsi10g0878 742 Pfam WD domain, G-beta repeat 612 642 IPR001680 GO:0005515
Glsi10g0878 742 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 519 550 - -
Glsi10g0878 742 SUPERFAMILY WD40 repeat-like 372 697 IPR036322 GO:0005515
Glsi10g0878 742 Gene3D - 455 725 IPR015943 GO:0005515
Glsi10g0878 742 Gene3D - 172 454 IPR015943 GO:0005515
Glsi10g0878 742 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 613 642 - -
Glsi10g0878 742 SMART WD40_4 606 643 IPR001680 GO:0005515
Glsi10g0878 742 SMART WD40_4 558 599 IPR001680 GO:0005515
Glsi10g0878 742 SMART WD40_4 410 447 IPR001680 GO:0005515
Glsi10g0878 742 SMART WD40_4 370 407 IPR001680 GO:0005515
Glsi10g0878 742 SMART WD40_4 650 695 IPR001680 GO:0005515
Glsi10g0878 742 SMART WD40_4 512 551 IPR001680 GO:0005515
Glsi10g0878 742 SMART WD40_4 470 509 IPR001680 GO:0005515
Glsi10g0878 742 MobiDBLite consensus disorder prediction 329 360 - -
Glsi10g0878 742 ProSiteProfiles Trp-Asp (WD) repeats profile. 519 550 IPR001680 GO:0005515
Glsi10g0878 742 ProSiteProfiles Trp-Asp (WD) repeats profile. 477 518 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0878 Glsi-ChrGlsi10 5632540 5636990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0878 74 287 C3H Transcription Factor Family AT2G20030 35.135 7.62e-25 105