Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0877 ATGGGATCGATAATGGCGACAAAGGAGAATCCAAGTAATGATGAACTCCGCTCCGCTGCCATAAAAACAGTGTCAGTGAGCTCGAACAACTCTAATTGCTCGGTCAATCGGCTGGAGAACATAGATGAGAATGCTCCTGCAGAATGGTCAGCAGTGTCTTGTGCCCCTCCTGATACTCCAACTGAATCCATGGAGTTTCTTGCTAGATCATGGAGTCTTTCGGCCATGGAGCTCTCCAAAGCACTGCACGACACCAACATTATGACTTCTTCTGGTGTCAAGATGCCAGTTTCCTGTCATCTTGTTAGCGAAGTCGCTGCTAAGGGTTCTACAGCTTCAAAAGATTCTTTTTTACGTGATGGATGTAGCCCTCCAATTTCGCCAAGAGGCAGTGACGAAATGAAGGAGTTATTTTTACTCCATCAAGCACTTAATCCGGAATTCCTTTCCAGTCAACACATGCTCAGAAATGGGCAGCTTTACAGGAGCTTGCTAAGAGGGAAGACCATGGGTAGGTGGTTGAAAGATCAAAAGGAGAGGAAAAAGCAGGAAATAAGGACCCATAATGCTCAGTTGCACGCTGCAGTATCGGTCGCAGGTGTTGCTGCTGCGGTTGCGGCAGTTGCAGCTTCGACAGCATCACCTGAAATGCCACTTGCCAACCAAAAGAACCCCCCGAAGACTTATGCTGCAATTGCATCTGCAGCAGCTTTAGTAGCATCTCATTGCATTGAGATTGCAGAAGATATGGGAGCTGACCACGACCAAATCTTAACGGCAGTCAACTCTGCCATTAATGCAAAGACCAATGGAGATATAATGACTCTAACAGCCGGAGCAGCAACAGCCTTGCGAGGAGCTGCTACTCTAAAGGCAAGAATGCAAAAGGGAATTGGAGCTTCAACATTTGCTTTAGTGGAGGAGAAGTGTGAAGAAGGAAAAGAAGCAAACATCTTGACAGCGCTAGACTGTGTCTTTAGAGGAGGAGAACTTCTCAAACGTACAAGAAAAGGAGCTCTTCACTGGAAGCAGGTGTCCTTCATTATGAATTCAAATTTGCAGGTTGTAGCCAAACTGAAAAGCAAGCACATGGCAGGAACGTTCATGAAAAAGAAGAAATATATAGTCACTGGAGTCTGCGGTGATATTCGAGCTTGGCCTGGAAGGGAGAAGGAAGAGAGAATTGAAAAAAGGGCTTATTTCGGAATAAAAACAGCAGAGAGGATAATAGAGTTTGAATGTGCAAGTAAAGATGACAAACGGATATGGATTGAGGGGATCCAGTATATGTTGAACAGCCGTGCCAAAGTTCAACTACAAAATGGGAATCTGGAGAACCATATGTCAGAAAAGCATTTGTATATCTCTCTTGTGCATCAAGCAAAGCACCCGGCCATGGCCAAAATCGCTCTCGGAACCACGCTAGAGGCCACCCAACCCGACTGCATTCATGCCCTCATTGTTGAATTCATCACCACCTTCCTTTTCGTCTTTGTCGGTGTTGCTTCTGCCATGGCCGCCGATAAGCTAGGTGCAGATGCACTTGTAGGCTTGCTTGCTGTGGCCGTCGCACATGCACTTGTGGTGGCTGTTATGATTTCCGCCGGCCACATTTCCGGTGGCCACCTTAATCCAGCCGTCACACTCGGCCTCCTTGTTGGCGGTCACATCACCCTCGTCCGTTCCATCCTTTATTGGATTGATCAATTACTGGCATCTGCGGCTGCTTGTTACCTTCTTTACTACCTCTCCGGGGGACTGACAACTCCGGTTCATACGCTTGCAAGCGGAGTGGGGTACGCTCAGGGAGTCATTTGGGAGATTATCCTAACATTCTCTCTCTTGTTTTCTGTGTATGCTACCATGGTCGATCCCAAGAAGGGAGCACTTGATGGGATTGGCCCAACTTTGGTTGGGTTTGTAGTGGGGGCTAACATCCTCGCTGGTGGGGCTTTTTCCGCTGCTTCCATGAACCCAGCAAGATCCTTTGGGCCTGCCTTGGTTAGTGGAAACTGGACTGATCACTGGGTTTACTGGGTTGGACCACTCATAGGTGGTGGCCTTGCTGGCTTCATCTATGAGACCTTCTTCATCAACAGATCGCATGCTCCACTTCCTCGGGATGAAGAAAACTACTAG 2139 0.4773 MGSIMATKENPSNDELRSAAIKTVSVSSNNSNCSVNRLENIDENAPAEWSAVSCAPPDTPTESMEFLARSWSLSAMELSKALHDTNIMTSSGVKMPVSCHLVSEVAAKGSTASKDSFLRDGCSPPISPRGSDEMKELFLLHQALNPEFLSSQHMLRNGQLYRSLLRGKTMGRWLKDQKERKKQEIRTHNAQLHAAVSVAGVAAAVAAVAASTASPEMPLANQKNPPKTYAAIASAAALVASHCIEIAEDMGADHDQILTAVNSAINAKTNGDIMTLTAGAATALRGAATLKARMQKGIGASTFALVEEKCEEGKEANILTALDCVFRGGELLKRTRKGALHWKQVSFIMNSNLQVVAKLKSKHMAGTFMKKKKYIVTGVCGDIRAWPGREKEERIEKRAYFGIKTAERIIEFECASKDDKRIWIEGIQYMLNSRAKVQLQNGNLENHMSEKHLYISLVHQAKHPAMAKIALGTTLEATQPDCIHALIVEFITTFLFVFVGVASAMAADKLGADALVGLLAVAVAHALVVAVMISAGHISGGHLNPAVTLGLLVGGHITLVRSILYWIDQLLASAAACYLLYYLSGGLTTPVHTLASGVGYAQGVIWEIILTFSLLFSVYATMVDPKKGALDGIGPTLVGFVVGANILAGGAFSAASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFIYETFFINRSHAPLPRDEENY 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0877 712 SUPERFAMILY PH domain-like 313 431 - -
Glsi10g0877 712 Pfam Plant pleckstrin homology-like region 330 433 IPR013666 -
Glsi10g0877 712 Gene3D Glycerol uptake facilitator protein. 467 707 IPR023271 -
Glsi10g0877 712 CDD PH 329 427 - -
Glsi10g0877 712 Gene3D - 305 461 IPR011993 -
Glsi10g0877 712 Pfam Major intrinsic protein 478 693 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g0877 712 PANTHER EXPRESSED PROTEIN 48 435 IPR040269 -
Glsi10g0877 712 FunFam Probable aquaporin TIP1-1 467 709 - -
Glsi10g0877 712 Pfam Auxin canalisation 57 302 IPR008546 -
Glsi10g0877 712 ProSiteProfiles PH domain profile. 324 432 IPR001849 -
Glsi10g0877 712 SUPERFAMILY Aquaporin-like 476 706 IPR023271 -
Glsi10g0877 712 ProSitePatterns MIP family signature. 542 550 IPR022357 -
Glsi10g0877 712 PRINTS Major intrinsic protein family signature 676 696 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g0877 712 PRINTS Major intrinsic protein family signature 484 503 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g0877 712 PRINTS Major intrinsic protein family signature 606 624 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g0877 712 PRINTS Major intrinsic protein family signature 524 548 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g0877 712 PRINTS Major intrinsic protein family signature 561 580 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g0877 712 PRINTS Major intrinsic protein family signature 639 661 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi10g0877 712 SMART PH_update 325 434 IPR001849 -
Glsi10g0877 712 CDD MIP 485 696 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0877 Glsi-ChrGlsi10 5622050 5631838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0877 466 710 Major Intrinsic Protein MIP AT2G25810 79.592 5.96e-128 378