Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0876 ATGGAATGGATTGGGTTAGGTTTTCAGCTTTCCAGCTTGTCCAGCTTTCTCCTTTTCAACTTCGCTTATTGCAAGCCCTACCTTTCTCTCCGCAAGCCCACTGATCGGTTCGATTTCCTGCCAAGACGGATTGTTAGATACATGGAGAGGATCCTCGGAGGCAAGTATAAGATGGGCCGGAAAATTGGAAGCGGCTCCTTTGGTGAAATTTATATTGCTTCTCATATCGAGACTTCTGAGATTGTGGCCGTGAAGATGGAGAGCAAGAAGACTAAACATCCCCAACTACTGTATGAGGCCAAGTTATATAGTATTCTTCAAGGAGGAAGTGGTATTCCAAATGTGAAATGGTGTGGTATTGATGGAGACAATAATGTTCTAGTCCTTGATCTTCTGGGACCAAGCCTTGAGGACCTTTTTGTATACTGCGGAAGGAAGTTTTCATTAAAAACAGTTTTAATGTTGGCTGATCAGATGCTTACAAGGATAGAGTATTTGCATTCTAAGGGATTTTTGCATAGAGACATCAAACCAGACAACTTTCTTATGGGTCTTGGGAGGAAAGCAAATCAGGTTTATGTTATTGATTTTGGACTTGCAAAAAGATATAAGGATCCTACCACAATCAAGCATATTCCTTACAGAGAGAACAAAAGTTTAACAGGCACTGCGCGATATGCGAGTTGCAATACTCATTTAGGAATTGAGCAAAGTCGCCGGGATGATTTGGAGTCTCTTGGCTATGTTCTTGTGTACTTCTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGAAAGCTTCTACTAAAAAGCAAAAATATGACAGGATTTGTGAGAAGAAGTTATCCACTCCCATCGAGATCCTCTGCAAGTCTTATCCCGCGGAATTTGCTTCTTACTTCCATTATTGCCATTCTTTGACATTTGATCAACGCCCAGATTATGGATTCTTGAAGCGACTGTTCCGTGATTTATGCACTCGTGAAGGATATGATTCTGACCATATATTTGACTGGACCATTCTAAAGTATCAGCAGACGCAACAGACCAAGACGAAGGATCAATCAACTCCTGCTGCTGTTGTGCCTTGCAGTCTAGAGACAAATGTTGTAGATAAGCGTAAAGGAGTCAATGGCTCTGCTCAAATTGCTGAGGCAAGACCATCAACAAATCTTGGCCATCCACGTGTTAGCATGCAGATCAGGTCACCAAATGTTCAGAATCGAAATGACGAGAGTCGGATTGAGAAACTTACGGCGAAAAATGGTCCATCTATCTCGTCTGCCATGCCCAGATCAACTGAAAATGTCTCAAAACCGGAACGGGCAATAGGAACCTCAAACCTGGGTCGTGTATTTGGGAATAACTCCGAAGTTGAACTCTTTCCTCGGACATCACTGACTGGGTTTGTTCCTCAGACATGGGTTTTGAAGGAGTCAATTGACTCTTGCGAGTGTGTTATTACTGTGGCAAATGTCAAAGACACTCACTTGGCCAGAGGAAGACAAGCAAGAGGCCACATGGATCTTCCCTGA 1530 0.4307 MEWIGLGFQLSSLSSFLLFNFAYCKPYLSLRKPTDRFDFLPRRIVRYMERILGGKYKMGRKIGSGSFGEIYIASHIETSEIVAVKMESKKTKHPQLLYEAKLYSILQGGSGIPNVKWCGIDGDNNVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGRKANQVYVIDFGLAKRYKDPTTIKHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLESLGYVLVYFLRGSLPWQGLKASTKKQKYDRICEKKLSTPIEILCKSYPAEFASYFHYCHSLTFDQRPDYGFLKRLFRDLCTREGYDSDHIFDWTILKYQQTQQTKTKDQSTPAAVVPCSLETNVVDKRKGVNGSAQIAEARPSTNLGHPRVSMQIRSPNVQNRNDESRIEKLTAKNGPSISSAMPRSTENVSKPERAIGTSNLGRVFGNNSEVELFPRTSLTGFVPQTWVLKESIDSCECVITVANVKDTHLARGRQARGHMDLP 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0876 509 PANTHER CASEIN KINASE-RELATED 54 400 - -
Glsi10g0876 509 Gene3D Transferase(Phosphotransferase) domain 1 41 377 - -
Glsi10g0876 509 ProSiteProfiles Protein kinase domain profile. 56 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0876 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Glsi10g0876 509 CDD STKc_CK1_delta_epsilon 55 329 - -
Glsi10g0876 509 SUPERFAMILY Protein kinase-like (PK-like) 51 337 IPR011009 -
Glsi10g0876 509 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Glsi10g0876 509 FunFam Casein kinase I isoform delta-like 48 386 - -
Glsi10g0876 509 SMART serkin_6 56 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0876 509 Pfam Protein kinase domain 56 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0876 Glsi-ChrGlsi10 5612662 5619755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0876 58 328 MAP Kinase Kinase Kinase AT1G62400 28.421 1.45e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Glsi10g0876 Pkinase 9.6e-29 CL0016