Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0840 ATGCAAAAGGACAAGGAAGCCAGCAAAGAAGGGACGGATAAGGAAATGGAAGAGACTGGTGGAAAGGAGGAAACCCTACCCCCGGGATTTCGCTTTCACCCTACTGACGAAGAGCTTATCACTTGCTACCTCATAAACAAGATATCTGATTCTAGTTTTACAGGAAGAGCAGTTACTGATGTAGATCTCAACAAATGCGAGCCATGGGAGCTTCCTGGGAAAGCGAAGATGGGAGAAAAAGAATGGTACTTCTTCAGTGTAAGAGATCGGAAATACCCGACGGGAGTGAGAACCAATAGAGCAACCAACACCGGGTACTGGAAAACCACAGGGAAAGACAAGGAAATCCTCAACAGTGTAACATCGGAGTTGGTTGGTATGAAGAAGACTTTGGTATTCTACAAAGGCAGGGCCCCTAGAGGGGAGAAAAGCAATTGGGTCATGCATGAATACCGCATTCACTCCAAATCCAACTTCAGAACTAATAACAAGGATGAATGGGTGGTTTGCAGAGTGTTCCAGAAGAGTGCTGGTGTAAAAAAATACCCTTCCAACCATACAAGACCAGTGAATCCTTATAGCCTGGAAATAGGGCCTAGCATTGTGCCACCACCAATGATGCATCTGGGGGATCCTGCTGCTCATTTTCTTTATGGGAGGAATTACATGAGCAGTGCAGAAGTAGCAGAAGTTGCTAGGGTTTTGAGAGGGGGTGGTGGCTCAACCAGTCTCAACCAGCTGAGCTACCCAGCAGCAGCTGCAGGAGGAGGCTTCACTATTTCTGGGCTGAATTTGAATCTGGGAGGAGGGGCGGCCCCCACACAGCATGATGTCAGTTCCAACATGATGACAACCTCTTCTCTTGCCGCAGAGAATCTAGGGTACGGGAGTGCAGAAATGAGCAACCCAAATCCTCCAAGCAATAGGTATAATATTGGCATGGATCATTGTGTGGATTTAGATAATTACTGGCCTTCCTACTAA 984 0.4695 MQKDKEASKEGTDKEMEETGGKEETLPPGFRFHPTDEELITCYLINKISDSSFTGRAVTDVDLNKCEPWELPGKAKMGEKEWYFFSVRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSNFRTNNKDEWVVCRVFQKSAGVKKYPSNHTRPVNPYSLEIGPSIVPPPMMHLGDPAAHFLYGRNYMSSAEVAEVARVLRGGGGSTSLNQLSYPAAAAGGGFTISGLNLNLGGGAAPTQHDVSSNMMTTSSLAAENLGYGSAEMSNPNPPSNRYNIGMDHCVDLDNYWPSY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0840 327 MobiDBLite consensus disorder prediction 1 31 - -
Glsi10g0840 327 SUPERFAMILY NAC domain 23 175 IPR036093 GO:0003677|GO:0006355
Glsi10g0840 327 ProSiteProfiles NAC domain profile. 26 175 IPR003441 GO:0003677|GO:0006355
Glsi10g0840 327 FunFam NAC domain-containing protein 100-like 35 179 - -
Glsi10g0840 327 Gene3D NAC domain 35 179 IPR036093 GO:0003677|GO:0006355
Glsi10g0840 327 Pfam No apical meristem (NAM) protein 27 153 IPR003441 GO:0003677|GO:0006355
Glsi10g0840 327 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 221 - -
Glsi10g0840 327 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0840 Glsi-ChrGlsi10 5362136 5363719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0840 22 327 NAC Transcription Factor Family AT2G24430 53.474 2.51e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi10g0840 NAM 8.1e-40 No_clan