LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g0822	ATGCTGGTTCTCAATTCCCATCTTCCATTAATGGCTTACCACAAAGTCTATTATGGGCTTGTTATGCTCTTCATTATTTTGGCCATATGTTTTGTGCCATCATTGGGTGACACTAACCAACAAATTCTGATGCGGTTCAGGGGCTTCTTGGCCAATGCTGATGCCTTAAACAACTGGGGGAACAATTCCCCCAGTCTCTGCAACTGGGCTGGTATAGTATGCCGCCACAACACTTTTAACGGTTTGAGACTGGAGAACATGGGACTAAGTGGCATTATTGACATAGATACCTTAGCGGAATTGTCAAATTTGAGCAGTTTTAGCGTCATTAACAACAACTTTGAGGGTCAAATACCTGAATTTAAAAAGCTTGCGAGGTTAAGGGGATTGTTTTTGTCCAAAAACAAATTCTCTAGACAAATTCCTGATGATACTTTTAAGGGTATGAAAGAATTGAAGAGCGTGTTCTTGGCAGAAAATGGGTTCACAGGTCATGTTCCTAGCTCCCTGGCTGAATTGCCTAAGCTTTTGGATTTGGACTTACGAGGGAATCGTTTTGAAGGCAACATACCAGAATTTCGAAAAAATGATTTCAGAGTGTTTAATTTATCCAACAACCAATTGAAGGGTCCAATCCCAGAAAGCTTAAGCAACAAGGATCCCACCTCATATGCTGGCAACAACGGGCTATGTGGAAAACCTTTACACCCCTGCAGCAAGCCCTCCTCCAAGAAGCGCCACATCCTTATAACTGCTATTATAGTGGTGGCTGTGATCGCCTTGGCTTCAATGATAGCAGTTATATTCTTCCTCAGCCGCAGGAGGCGAAGATCTCAGAGCCAATTTAGTCAGGAAGTGAAATCCCAGGACAGTGGAAGCTTGTTGAAGGAGGCCCAGTCAATTGATCTGACAGCTGAGTTCAAGAAGGGTGAAGATGGAGGTTTGAATTTTGTTAGGAAAGACAGAGAGAGGTTTGATCTGCCAGACCTTCTGGGAGCCTCTGCCGAAGTTCTGGGTAGTGGCAGTTTTGGATCTACATATAAGGCTATTGTTTTGAACGGGCCAGCTATGGTTGTGAAGAGGTTTAGGCACATGAACAATGTTGGGAAAGAGGAGTTTTTTGGGCACATGAGAAGGCTTGGGAACTTGAACCATCCTAATCTACTTCCTCTTGTTGCATTCTACTACAGAAAAGAAGAGAAGCTTTTGGTTTATGACTTTGTTGAAAATGGCAGCTTGGCTAGTCATCTCCATGGTAGACGGGGTTCGGGGTTGGACTGGCCAACTCGCCTCAAAATCATAAAAGGAGTAGCCAGAGGTTTAGCCTACCTCTACAGAGAGTTGCCAGGACAAAGCCTAGCTCATGGGCATCTGAAGTCGTCGAATGTCTTGCTAGACCAGTCGATGAAGCCCCATTTGACAGAATATGGACTTGTGGCAGTGATGGACAAAAGCCATGCTCAACACTTCATGGCGGCCTGCAAGGCCCCAGAGGTGAATCAATTTGACAGACCAAACGAGAAGACAGATGTTTGGTGTCTAGGAATAATGATCCTTGAACTGCTGACGGGGAAGTTCCCAGCAAATTACCTAAGGCATGGGAAGGGGAATAATTCAGATTTGGCAACGTGGGTGAACTCAGTAGTGAGGGAGGAGTGGACCGGGGAGGTGTTTGATAAGGATATATTGGGGACAAGGAATGGGGAGGGCGAGATGCTGAAGCTGTTGAAGATAGGGATGTGCTGCTGCGAATGGGAGGTGGAGAGGAGGTGGGATTGGAAAGAGGCGGTGGCTAAGATTGAGGAGTTGAAGGAGAAAGATAGTGAAGATGAATACTCTTCTATTGCCAGTGAAGGGGATTACTCGAGGCCTACGACTGAGGAGGACTTCTCTTTCTCAGTGACAAGTTGA	1911	0.4553	MLVLNSHLPLMAYHKVYYGLVMLFIILAICFVPSLGDTNQQILMRFRGFLANADALNNWGNNSPSLCNWAGIVCRHNTFNGLRLENMGLSGIIDIDTLAELSNLSSFSVINNNFEGQIPEFKKLARLRGLFLSKNKFSRQIPDDTFKGMKELKSVFLAENGFTGHVPSSLAELPKLLDLDLRGNRFEGNIPEFRKNDFRVFNLSNNQLKGPIPESLSNKDPTSYAGNNGLCGKPLHPCSKPSSKKRHILITAIIVVAVIALASMIAVIFFLSRRRRRSQSQFSQEVKSQDSGSLLKEAQSIDLTAEFKKGEDGGLNFVRKDRERFDLPDLLGASAEVLGSGSFGSTYKAIVLNGPAMVVKRFRHMNNVGKEEFFGHMRRLGNLNHPNLLPLVAFYYRKEEKLLVYDFVENGSLASHLHGRRGSGLDWPTRLKIIKGVARGLAYLYRELPGQSLAHGHLKSSNVLLDQSMKPHLTEYGLVAVMDKSHAQHFMAACKAPEVNQFDRPNEKTDVWCLGIMILELLTGKFPANYLRHGKGNNSDLATWVNSVVREEWTGEVFDKDILGTRNGEGEMLKLLKIGMCCCEWEVERRWDWKEAVAKIEELKEKDSEDEYSSIASEGDYSRPTTEEDFSFSVTS	636

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g0822	636	ProSiteProfiles	Protein kinase domain profile.	332	636	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g0822	636	Pfam	Leucine rich repeat N-terminal domain	41	74	IPR013210	-
	Glsi10g0822	636	FunFam	Pollen receptor-like kinase 1	408	614	-	-
	Glsi10g0822	636	Gene3D	Transferase(Phosphotransferase) domain 1	408	622	-	-
	Glsi10g0822	636	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	25	609	IPR046959	-
	Glsi10g0822	636	MobiDBLite	consensus disorder prediction	604	636	-	-
	Glsi10g0822	636	Gene3D	Ribonuclease Inhibitor	36	196	IPR032675	-
	Glsi10g0822	636	SUPERFAMILY	Protein kinase-like (PK-like)	336	603	IPR011009	-
	Glsi10g0822	636	SUPERFAMILY	L domain-like	52	219	-	-
	Glsi10g0822	636	ProSitePatterns	Protein kinases ATP-binding region signature.	338	360	IPR017441	GO:0005524
	Glsi10g0822	636	Pfam	Leucine rich repeat	126	186	IPR001611	GO:0005515
	Glsi10g0822	636	Gene3D	Ribonuclease Inhibitor	199	239	IPR032675	-
	Glsi10g0822	636	MobiDBLite	consensus disorder prediction	618	636	-	-
	Glsi10g0822	636	Pfam	Protein kinase domain	336	597	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g0822	636	Gene3D	Phosphorylase Kinase; domain 1	302	407	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g0822	Glsi-ChrGlsi10	5276956	5279441	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g0822	18	628	Receptor kinase-like Gene Family	AT4G31250	45.577	0.0	567

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Glsi10g0822		Pkinase	6.2e-29	CL0016