Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0818 ATGGAACAGAGGCTCAGGCTTCAACAACAGCAAGCCTTGCTTCAGCAACAACAGATGTATCACCCCGGGATGTTAGCAGCTGCTATGTCTCAGATGGAGCCTATCTCAAGTGGAAATCTGCCTTCTGGTTTTGACACTTCTACATGTCGCAGTGTTTATGTAGGAAATATTCATGTAAATGTTACTGAAAAACTTCTTGCTGAAGTCTTTCAGCGTGCTGGTCTTCTTGCTGGGTGCAAGCTCATCAGGAAAGAGAAGTCCTCCTATGGTTTTGTGGACTACCATGATCATGCATCTGCAGCCCTTGCAATAATGACATTGCATGGACGCCAACTATATGGTCAGGCACTTAAGGTTAATTGGGCATATGCCAATAGCCATAGGCAGGATACTTCAGGGCACTTCAATATATTTGTTGGTGATCTGAGTCCAGAGATTACTGATGCAACTTTATTTGCATGTTTCTCAGTCTATCCTAGTTGTTCTGATGCAAAGGTTATGTGGGATCATAAAACTGGTCGCTCCAAAGGATATGGTTTTGTTTCCTTCCGTGATCAGCAGGATGCCCAAAGTTCCATCAATGATATGACTGGTAAATGGCTTGGAAATAGGCAAATACGATGCAACTGGGGAACTAAGGGTTCTGGTACAAACACCAATGAGGAGAACAATGACAGCCAAAACGCCGTTGTTCTTTCAAATGGATCTTCAGATGAAGGTCTGGAATATAACAATGAGGATGCTCCTGAAAACAGTCCATCCTACACCACTGTTTATGTTGGCAACATTCCCCATGATGTAACACAAGCTGAACTCCACTGTCAGTTCCATGCACTGGGGGCTGGGGTTATTGAGGAAGTCCGAGTTCAGAGGGATAACAGTTTTGGATTTGTTAGATACAACACTCATGAAGAAGCAGCATTGGCCATTCAGGTGGCTAATGGAAGAATAATTCGTGGGAAGACAATGAAGTGTTCATGGGGCAGCAAGCCAACTCCTCCTGGAACAGCTTCGAATCCACTACCTCCTCCTGCTCAACCTTATCACATTTTTCCCACGACGGGGATGAACCAAAGCTATTCTCCCACTGAGTTATTGGCTTATCAGCGCCAACTGGCCTTAAATCAGGCTGCTATATCAGGCCTTTCAGGTCAAGCTCTTGTGAATATGACCGGACGACAGGGCCTCGCTGCTGCTTCCATGGGCTTGAATTCTGGGGGATCCCAAGCCATGTACGATGGATATTCTGGTAATTCTTCAAGGCAGCAGCTTATCTACTATCGTTAA 1287 0.4514 MEQRLRLQQQQALLQQQQMYHPGMLAAAMSQMEPISSGNLPSGFDTSTCRSVYVGNIHVNVTEKLLAEVFQRAGLLAGCKLIRKEKSSYGFVDYHDHASAALAIMTLHGRQLYGQALKVNWAYANSHRQDTSGHFNIFVGDLSPEITDATLFACFSVYPSCSDAKVMWDHKTGRSKGYGFVSFRDQQDAQSSINDMTGKWLGNRQIRCNWGTKGSGTNTNEENNDSQNAVVLSNGSSDEGLEYNNEDAPENSPSYTTVYVGNIPHDVTQAELHCQFHALGAGVIEEVRVQRDNSFGFVRYNTHEEAALAIQVANGRIIRGKTMKCSWGSKPTPPGTASNPLPPPAQPYHIFPTTGMNQSYSPTELLAYQRQLALNQAAISGLSGQALVNMTGRQGLAAASMGLNSGGSQAMYDGYSGNSSRQQLIYYR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0818 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Glsi10g0818 428 SUPERFAMILY RNA-binding domain, RBD 238 336 IPR035979 GO:0003676
Glsi10g0818 428 FunFam Oligouridylate-binding protein 1C 233 334 - -
Glsi10g0818 428 Gene3D - 1 132 IPR012677 -
Glsi10g0818 428 SUPERFAMILY RNA-binding domain, RBD 34 128 IPR035979 GO:0003676
Glsi10g0818 428 Gene3D - 235 334 IPR012677 -
Glsi10g0818 428 FunFam Nucleolysin TIAR-like protein 1 133 - -
Glsi10g0818 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 207 IPR000504 GO:0003723
Glsi10g0818 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 118 IPR000504 GO:0003723
Glsi10g0818 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258 324 IPR000504 GO:0003723
Glsi10g0818 428 SUPERFAMILY RNA-binding domain, RBD 129 216 IPR035979 GO:0003676
Glsi10g0818 428 CDD RRM2_PUB1 134 213 - -
Glsi10g0818 428 MobiDBLite consensus disorder prediction 213 252 - -
Glsi10g0818 428 Gene3D - 133 234 IPR012677 -
Glsi10g0818 428 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 48 333 - -
Glsi10g0818 428 SMART rrm1_1 136 209 IPR000504 GO:0003723
Glsi10g0818 428 SMART rrm1_1 51 120 IPR000504 GO:0003723
Glsi10g0818 428 SMART rrm1_1 257 326 IPR000504 GO:0003723
Glsi10g0818 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 330 IPR000504 GO:0003723
Glsi10g0818 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 124 IPR000504 GO:0003723
Glsi10g0818 428 FunFam Nucleolysin TIAR-like protein 134 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0818 Glsi-ChrGlsi10 5255951 5262322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0818 51 330 Eukaryotic Initiation Factors Gene Family AT1G22760 24.055 6.26e-16 78.2