LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g0814	ATGTCTCGTGTGTATGTTGGTAACTTGGATTCAAGAGTTACCGAGAGAGAACTAGAAGATGAATTTCGTGTATTTGGAGTTATACGGAGTGTCTGGGTTGCACGGAGGCCACCGGGTTATGCCTTCATTGATTTTGATGACCGCAGAGATGCACAGGATGCCATTCGTGAATTAGATGGTAAGAATGGTTGGAGGGTGGAGCTTTCTCACAATTCTAGAGGTGGAGGTGGAGGTGGTGGTCGTGGAGGTGGCCGTGGTCGCTCTGGTGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCACTTTGCTCGTGAATGTCGTTCACGCGGTGGTTCAGGAAGACGTCGTAGTCGCAGTCCACCTCGATTTCGGAGGAGTCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGTGGGCGATCCCCTAGGCGTCGCAGTTTGTCACCTCGTGGACGCAGCTACAGCAGGTCACCTCCTTTCCGTGGACGTGAGGAGCTCCCTTATACTAATGGAAATGGCCTAAGGGAACGACGCCGAAGCAGAAGTTGA	555	0.5153	MSRVYVGNLDSRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGGRSPRRRSLSPRGRSYSRSPPFRGREELPYTNGNGLRERRRSRS	184

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g0814	184	CDD	RRM_SRSF3_like	3	71	-	-
	Glsi10g0814	184	MobiDBLite	consensus disorder prediction	99	114	-	-
	Glsi10g0814	184	MobiDBLite	consensus disorder prediction	66	184	-	-
	Glsi10g0814	184	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Glsi10g0814	184	Gene3D	-	1	73	IPR012677	-
	Glsi10g0814	184	FunFam	serine/arginine-rich splicing factor RSZ22-like	1	93	-	-
	Glsi10g0814	184	ProSiteProfiles	Zinc finger CCHC-type profile.	94	110	IPR001878	GO:0003676\|GO:0008270
	Glsi10g0814	184	SUPERFAMILY	Retrovirus zinc finger-like domains	87	112	IPR036875	GO:0003676\|GO:0008270
	Glsi10g0814	184	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	160	-	-
	Glsi10g0814	184	FunFam	Serine/arginine-rich splicing factor RSZ22A	91	152	-	-
	Glsi10g0814	184	SUPERFAMILY	RNA-binding domain, RBD	3	89	IPR035979	GO:0003676
	Glsi10g0814	184	Pfam	Zinc knuckle	94	109	IPR001878	GO:0003676\|GO:0008270
	Glsi10g0814	184	Gene3D	-	89	146	-	-
	Glsi10g0814	184	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Glsi10g0814	184	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Glsi10g0814	184	SMART	c2hcfinal6	94	110	IPR001878	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g0814	Glsi-ChrGlsi10	5217951	5221775	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g0814	2	61	Eukaryotic Initiation Factors Gene Family	AT1G49760	40.625	9.18e-06	43.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi10g0814	10	5217951	5221775	Glsi10g0814	10	5217951	5221775	ECH