Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0802 ATGGCTCACGTATTGAGAGATACTGCTAACACTAAAGATCGTAATGGTCAGTTGTGCAGCCGGCTTAGTTGCAGCAGCAGAGTCAACTCTCCTAAAGGTGCTCAAATTGGTTCTTCAAAAAAAGGTAAATCTTTGAGGCCTTCAATCCAATCCCCTTCAAGTCGCGAGGAAGCAATTGGAAGTTCCTCTAGAACTTTACCAGGACCTAGTAACCCAGGAAAATCCCTTATAGGGCCTCGGAAAACATTATCTTCTCGGTTAGAGACAGTTTCATGTGAAACTAGGAGTTTACAGGATGAACCAGAGCCACCTGAAAAAATTCAAAGAGGGCTTCAAGCTGAAGGGGAAATTACAGTCTATAATAATGTCATGCCGATGGAAGTAGGAAGCTCCAGTGTAGCATCAAATACAAGATGTCGGAGGAATCTTCATCAAAAGCCTGGATTGCGTGGTCAAGAAACTAAAAGTACTGGCCCAGTGACACGTGCTGGAACCAGCAGGTATGGATTGAGGAACCTCAGATGCAACTCGATATCTGATGTCACCCCAGCAGGATGTTCATCATCAGATTCAACCCTGAATAGAAGGAAAGATTTGATTAAAAAGAGAAATTGTGAAGGGGAAACTAGTTCCACAGCTAGAGGTAAGAAGATGAGTGGATCTTCTTTAGATGATTCCAGAAAAGGCATATCTATCTCTGACTCGAGAAGAGCCAGAAATATTCCTCCTCACAGGGACAACAACGTTGCATCAGTTAGAACTCGAAGATCATTCAGTGGTCATGCCAGGGGAAGACTTTCTAGCCAAGCAAATGTAAACCCTGTAACACCCAGTGAGTCCCCTGTCATTATATCACCTTTGCCTCATTCTGGTGACCTTAATGCTCCTGATTTATTACATAATACCTCTGTGGACATTCCTTTGCGTCGTCCGAGATCTTATAGCAGACCTGGTAGTGGCAGTGAGCAGTTATATGGCGTTATGCCTTTGTCTCCTGCAGAATATGGGATCACTCATTCTTTAATAAATCGGGATAGCTTTAGACGCTGCCACATGGATGGTATTGCAGAGGTATTATTGGCACTTGAGAGAATTGAACAAGACGAAGAACTAACACATGAGCAGCTTCTTTTACTGGAGACCAACTTGTTCCTTAATGGACTAAACTTCTACGATCAGCATAGAGACATGCGATTGGATATTGATAACATGTCATACGAGGAACTATTAGCTCTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCACTTTCAAAATGCCTAAAGAGAAGTGTCTATCAATCTGCATCTTCTGATGATGCAGCTGAGAGTAGCAACAAGGATAAGGATGATACGAAATGCAGCGTCTGCCAGGAGGAATATGAGGAAAGAGAAGAAGTGGGGAGTCTGCAATGCGAGCATAGGTATCATGTGGTCTGCATACAGCAATGGCTGAGGCTGAAGAACTGGTGTCCTATATGCAAAGCATCGGCGGCACCATCAAATTCATCTTCAACTCCTTGA 1536 0.4368 MAHVLRDTANTKDRNGQLCSRLSCSSRVNSPKGAQIGSSKKGKSLRPSIQSPSSREEAIGSSSRTLPGPSNPGKSLIGPRKTLSSRLETVSCETRSLQDEPEPPEKIQRGLQAEGEITVYNNVMPMEVGSSSVASNTRCRRNLHQKPGLRGQETKSTGPVTRAGTSRYGLRNLRCNSISDVTPAGCSSSDSTLNRRKDLIKKRNCEGETSSTARGKKMSGSSLDDSRKGISISDSRRARNIPPHRDNNVASVRTRRSFSGHARGRLSSQANVNPVTPSESPVIISPLPHSGDLNAPDLLHNTSVDIPLRRPRSYSRPGSGSEQLYGVMPLSPAEYGITHSLINRDSFRRCHMDGIAEVLLALERIEQDEELTHEQLLLLETNLFLNGLNFYDQHRDMRLDIDNMSYEELLALEERMGSVSTALTEEALSKCLKRSVYQSASSDDAAESSNKDKDDTKCSVCQEEYEEREEVGSLQCEHRYHVVCIQQWLRLKNWCPICKASAAPSNSSSTP 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0802 511 MobiDBLite consensus disorder prediction 194 210 - -
Glsi10g0802 511 MobiDBLite consensus disorder prediction 181 285 - -
Glsi10g0802 511 MobiDBLite consensus disorder prediction 211 228 - -
Glsi10g0802 511 MobiDBLite consensus disorder prediction 93 107 - -
Glsi10g0802 511 Pfam Ring finger domain 457 499 IPR001841 -
Glsi10g0802 511 ProSiteProfiles Zinc finger RING-type profile. 458 499 IPR001841 -
Glsi10g0802 511 MobiDBLite consensus disorder prediction 11 70 - -
Glsi10g0802 511 MobiDBLite consensus disorder prediction 229 243 - -
Glsi10g0802 511 SMART ring_2 458 498 IPR001841 -
Glsi10g0802 511 MobiDBLite consensus disorder prediction 261 280 - -
Glsi10g0802 511 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 46 503 IPR045191 GO:0061630
Glsi10g0802 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 507 IPR013083 -
Glsi10g0802 511 SUPERFAMILY RING/U-box 451 502 - -
Glsi10g0802 511 FunFam E3 ubiquitin-protein ligase arkadia 420 504 - -
Glsi10g0802 511 MobiDBLite consensus disorder prediction 1 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0802 Glsi-ChrGlsi10 5152881 5155003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0802 355 502 C3H Transcription Factor Family AT2G15530 41.892 6.10e-35 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0802 10 5152881 5155003 Glsi10g0802 10 5152881 5155003 ECH