LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g0799	ATGGGAGGTATCAGCCTCGAGGAGATCAAAAACGAGAACGTTGATCTGGAACGGATCCCAATAGAGGAAGTGTTTGAACAGCTGAAATGTTCAAGAGAAGGTCTAACGTCAGACGAGGGAGCCAATCGGCTTCAGGTTTTTGGGCCAAACAAATTGGAAGAGAAAAAGGAGAGCAAACTTTTGAAGTTCCTCGGTTTTATGTGGAACCCCTTGTCTTGGGTCATGGAAGCTGCTGCCATAATGGCTATAGCTTTGGCAAATGGCGGAGGAAGGCCTCCAGATTGGCAGGATTTCGTTGGTATCATTTGTCTACTGGTGATTAACTCCACGATCAGTTTTATCGAGGAAAACAATGCTGGCAATGCTGCTGCAGCACTTATGGCTGGTTTAGCTCCCAAGACCAAGGTTCTTAGAGATAGCCGATGGAGTGAACAAGATGCTGCAATTTTAGTTCCCGGAGACATAATCAGCATTAAGTTAGGAGATATCATTCCTGCTGATGCCCGTCTTCTTGAGGGTGATTCCTTGAGTGTTGATCAGTCTGCTTTAACCGGCGAGTCTCTTCCTGTGACGAAAAATTCCTCTGATGAAGTATTTTCCGGATCAACTGTTAAAAAGGGTGAGATAGAAGCAGTTGTGATTGCTACTGGTGTGCACACCTTTTTTGGTAAAGCTGCTCATCTGGTGGACAGCACCAACCAAGTTGGACACTTTCAGAAAGTTCTTACAGCAATTGGTAATTTCTGCATTTGCTCAATTGCTCTCGGAATAGCTATTGAGATCGTAGTCATGTACCCAATACAGCACCGCAAGTACAGAGATGGAATTGACAATCTATTGGTTCTCTTGATTGGAGGAATTCCAATTGCCATGCCAACTGTTTTGTCTGTCACTATGGCTATTGGTTCTCACAGACTTTCTCAGCAAGGTGCCATTACAAAGCGAATGACAGCTATTGAGGAAATGGCAGGGATGGACGTCCTCTGCAGTGACAAAACTGGAACTTTGACCCTAAATAAGCTAAGTGTAGATAGAAGCTTGATTGAGGTGTTTGCTAAGGGTGTAGAGAAGGAATATGTTATCCTTCTTGCAGCAAGGGCTTCTAGGACTGAAAATCAGGATGCAATAGATACTGCAATCGTAGGAATGCTTGCTGACCCAAAGGAGGCGCGAGCTGGTATCAGGGAGGTTCATTTCCTACCGTTCAATCCTGTAGACAAGAGGACTGCTCTAACCTACATCGATTCTGATGGAACTTGGCATAGAACTAGTAAAGGTGCGCCGGAGCAGATATTGAACCTTTGCAACTGCAAGGAGGATGTTAGAAAAAAGGTTCATACAGTCATTGATAAGTTCGCTGAGCGTGGACTCCGGTCTTTAGGTGTTGCAAGACAGGAAATACCCGAGAAAACCAAAGATGGTCCTGGTGGACCATGGCAATTTGTTGGTCTGCTACCTCTGTTTGATCCTCCAAGGCACGACAGTGCTGAAACCATCAGAAGAGCTCTTCACCTTGGAGTGAATGTCAAGATGATTACTGGGGATCAGCTTGCCATTGCCAAAGAAACTGGTCGAAGACTTGGAATGGGAACAAATATGTACCCGTCGTCTTCATTGCTTGGCCAAGACAAGGATGCTTCTATTTCAGCTCTTCCTGTTGACGAGTTGATTGAGAAGGCGGATGGATTTGCAGGAGTTTTTCCCGAACACAAATATGAAATCGTTAAGAGGCTGCAAGAGAGGAAGCATATCTGTGGAATGACGGGAGATGGTGTCAATGATGCCCCTGCATTAAAGAAGGCAGACATTGGAATCGCTGTTGCAGATGCAACAGATGCTGCTAGAAGTGCTTCGGACATTGTCCTCACAGAACCTGGGTTGAGTGTCATTATTAGTGCAGTGCTCACTAGCAGAGCTATTTTCCAAAGGATGAAGAACTATACTATTTATGCTGTGTCAATCACCATTCGTATTGTGTTTGGTTTCATGTTTATTGCGTTAATCTGGAAGTTTGATTTTGCACCCTTCATGGTTCTGATTATTGCCATTCTAAATGATGGTACAATTATGACAATATCCAAGGATCGAGTGAAACCATCTCCACTGCCTGACAGCTGGAAACTAAAGGAGATATTTGCTACTGGCGTTGTGCTTGGCAGTTACTTGGCACTAATGACAGTAATTTTCTTCTGGGCCATGAAGGATACTCACTTCTTTTCGGACAAGTTTGGAGTGAGGCCTCTGAGAAATAACACTCACGAAATGATGGCAGCCTTATACCTACAAGTCAGTATTATAAGTCAGGCCCTAATTTTTGTCACAAGGTCCCGCAGCTGGTCCTATGTTGAAAGACCTGGTCTTCTCTTACTGGGTGCTTTTATGATTGCTCAGTTGGTGGCAACTGTTATAGCAGTCTATGCTAATTGGGGCTTCGCACGGATAAAGGGAATGGGATGGGGTTGGGCTGGTGTAATCTGGCTGTACAGTGTGGTGACTTATATTCCTCTTGATTTACTCAAATTCGCTATCCGCTACGTTCTGAGTGGGAAGGCTTGGGATAATCTTTTGGAGAACAAGACTGCATTCACTACAAAGAAAGACTATGGAAAAGAAGAGAGGGAAGCACAGTGGGCTGCTGCACAGAGAACTCTACATGGTCTTCAGCCACCGGAAACCTCCAACCTTTTCAATGACAAGAATAGCTACAGGGAGCTTTCAGAGATTGCCGAGCAAGCCAAACGGCGTGCTGAGGTTGCAAGGCTTAGGGAGCTACATACCCTGAAGGGTCATGTTGAGTCGGTGGTGAAGCTCAAGGGACTTGACATTGATACAATTCAGCAGCACTATACAGTGTGA	2856	0.4492	MGGISLEEIKNENVDLERIPIEEVFEQLKCSREGLTSDEGANRLQVFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDSRWSEQDAAILVPGDIISIKLGDIIPADARLLEGDSLSVDQSALTGESLPVTKNSSDEVFSGSTVKKGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIALGIAIEIVVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRSLIEVFAKGVEKEYVILLAARASRTENQDAIDTAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGTWHRTSKGAPEQILNLCNCKEDVRKKVHTVIDKFAERGLRSLGVARQEIPEKTKDGPGGPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDASISALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGSYLALMTVIFFWAMKDTHFFSDKFGVRPLRNNTHEMMAALYLQVSIISQALIFVTRSRSWSYVERPGLLLLGAFMIAQLVATVIAVYANWGFARIKGMGWGWAGVIWLYSVVTYIPLDLLKFAIRYVLSGKAWDNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPETSNLFNDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV	951

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g0799	951	Gene3D	-	326	625	IPR023214	-
	Glsi10g0799	951	SUPERFAMILY	Calcium ATPase, transduction domain A	132	229	IPR008250	-
	Glsi10g0799	951	PANTHER	CALCIUM-TRANSPORTING ATPASE	18	883	-	-
	Glsi10g0799	951	PRINTS	P-type cation-transporting ATPase superfamily signature	611	623	-	-
	Glsi10g0799	951	PRINTS	P-type cation-transporting ATPase superfamily signature	329	343	-	-
	Glsi10g0799	951	PRINTS	P-type cation-transporting ATPase superfamily signature	505	515	-	-
	Glsi10g0799	951	PRINTS	P-type cation-transporting ATPase superfamily signature	179	193	-	-
	Glsi10g0799	951	PRINTS	P-type cation-transporting ATPase superfamily signature	588	607	-	-
	Glsi10g0799	951	PRINTS	P-type cation-transporting ATPase superfamily signature	483	494	-	-
	Glsi10g0799	951	Coils	Coil	902	922	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g0799	Glsi-ChrGlsi10	5117929	5124233	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g0799	4	951	Primary Pumps ATPases	AT2G07560	83.333	0.0	1625

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi10g0799	10	5117929	5124233	Glsi08g1505	08	10900098	10905797	CCT
	Glsi10g0799	10	5117929	5124233	Glsi10g0799	10	5117929	5124233	ECH

Showing 1 to 2 of 2 entries