Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0793 ATGTTCTCCGGCAGCCAGTTTGATGCGACCTCCGCCTTCTCCGGTGGCGGATTCATGACCACTCAGGCTACCCAGCTCAACGATTCATCCCCATCACCGGCAAAAAGCCGTGAAACGCAGGGTTTGGTTCCGGTATCAGTGAAGCAGATAAGCGAAGCCTCTCAATCTGGTGATGAAAAGTCCAATTTCCTAATAAACGGTGTAGATGTGACCAATGTAACCTTGGTTGGAATGGTATTTGAGAAAGCTGAGAGAAACACTGACGTCAGTTTCATTCTAGATGACGGAACAGGACGGATCAAATGTCGAAGATGGGTGAATGAGACTTTTGACACAAAGGAAATGGAAGAAATAAGAGATGGTATGTATGTTCGTGTGTATGGGCATTTGAAAAGCTTTCAAGGTTTAAGGCAAGTTGTTGCTTTCTCTATCAGGCCTGTGATGAATTTTGATGAGATTTCGTTTCACTTTATTGATTGCATACATAATCACCTCCAGTCCAAAGTAAAGGTTGAAGGAACAAATCCTGCACATCCTCCATCATCAGACTCATCTTTGAACACTCCTGTCAGAAATGCATCAAATGGATATCAGGCACCATCATCAAATCCGTCATATGCACAATATAGCGTGGATGGACTCAAGGATTGTGATAAAATGGTTCTTGACTATTTGCAGCAGCATTCAGACATGTCGGACGAAAGAGGAATACATGTTGATCAGCTATCTCGAGAGCTTAAACTTCCATTGGACAAGATCATGTTGTCGCTGAAGAATCTTGGAGACGACGGATTAGTATACTCCACAATTGATGACTTCCATTACAAGCAAGCTTGA 837 0.4301 MFSGSQFDATSAFSGGGFMTTQATQLNDSSPSPAKSRETQGLVPVSVKQISEASQSGDEKSNFLINGVDVTNVTLVGMVFEKAERNTDVSFILDDGTGRIKCRRWVNETFDTKEMEEIRDGMYVRVYGHLKSFQGLRQVVAFSIRPVMNFDEISFHFIDCIHNHLQSKVKVEGTNPAHPPSSDSSLNTPVRNASNGYQAPSSNPSYAQYSVDGLKDCDKMVLDYLQQHSDMSDERGIHVDQLSRELKLPLDKIMLSLKNLGDDGLVYSTIDDFHYKQA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0793 278 CDD RPA2_DBD_D 72 165 - -
Glsi10g0793 278 FunFam replication protein A 32 kDa subunit A-like 35 169 - -
Glsi10g0793 278 Pfam OB-fold nucleic acid binding domain 73 145 IPR004365 GO:0003676
Glsi10g0793 278 PIRSF RPA32 1 278 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Glsi10g0793 278 MobiDBLite consensus disorder prediction 20 43 - -
Glsi10g0793 278 SUPERFAMILY "Winged helix" DNA-binding domain 212 276 IPR036390 -
Glsi10g0793 278 Gene3D - 208 278 IPR036388 -
Glsi10g0793 278 PANTHER REPLICATION PROTEIN A-RELATED 6 276 IPR040260 -
Glsi10g0793 278 Pfam Replication protein A C terminal 184 272 IPR014892 -
Glsi10g0793 278 MobiDBLite consensus disorder prediction 171 204 - -
Glsi10g0793 278 MobiDBLite consensus disorder prediction 177 204 - -
Glsi10g0793 278 Gene3D - 34 168 IPR012340 -
Glsi10g0793 278 SUPERFAMILY Nucleic acid-binding proteins 42 166 IPR012340 -
Glsi10g0793 278 FunFam Replication protein A 32 kDa subunit 209 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0793 Glsi-ChrGlsi10 5083140 5087380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0793 1 276 Core DNA Replication Machinery Family AT2G24490 49.462 2.21e-96 283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0793 10 5083140 5087380 Glsi10g0793 10 5083140 5087380 ECH