Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi10g0768 | ATGGGAGAGGTTGCTGTAATGCATTCTGAGTCTTTGCAGTTTGAGTGCAAAGACATGAAACATGTGAGTGTTAAAGAGGTGTATATTCCACAATCAAATGCAGAGCACACACCTGGAGAAAAATCAGGTGAACCAACAGATCACAAAAGGATCAAAGACCTGCGAGAAAGAGGATATATGCTATATGGATGTGCACATTACCGGAGAAGATGTCGTATCAGGGCCCCTTGTTGCAATGAGGTTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATAATATCAGCATTGATCAGAAGCATAGGCATGACATTCCCCGCCATCAAGTCAAACAGGTGATATGTTCACTCTGTGGGACTGAACAAGAGGTTCAGCAGAACTGTACAAACTGTGGTGTTTGTATGGGAAAATACTTCTGTGAGGCATGCAAGCTTTTTGATGACGATATATCTAAGCAGCAGTACCATTGCAGTGGTTGTGGGATTTGCAGAATTGGAGGACGTGAGAATTTCTTCCATTGCTACAAGTGTGGATGTTGCTACTCTATTCTGCTGAAAAATAGTCACCCCTGTGTGGAAGGAGCAATGCATCACGATTGCCCTGTTTGTTTTGAGTATTTGTTCGAGTCTAGAAACGATGTCACTGTTATGCCCTGTGGACATACGATCCATAAAATCTGCCTGAAGGAAATGAGAGAACATTTCCAGTATGCATGCCCTCTCTGCTCGAAGTCAGTCTGCGATATGTCTAAGGTTTGGGAAAAATTTGACATGGAGATTGCTGCTACACCAATGCCTGAACCTTTTCAAAATAAAATGGTTTGGATCCTTTGCAATGATTGTGGAAAAACTTCACATGTTCAGTTCCATGTTGTGGCTCAAAAATGTCCGAACTGCAAATCCTACAACACACGACAAACAAGAGGCTGA | 930 | 0.4237 | MGEVAVMHSESLQFECKDMKHVSVKEVYIPQSNAEHTPGEKSGEPTDHKRIKDLRERGYMLYGCAHYRRRCRIRAPCCNEVFDCRHCHNEAKNNISIDQKHRHDIPRHQVKQVICSLCGTEQEVQQNCTNCGVCMGKYFCEACKLFDDDISKQQYHCSGCGICRIGGRENFFHCYKCGCCYSILLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKICLKEMREHFQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPFQNKMVWILCNDCGKTSHVQFHVVAQKCPNCKSYNTRQTRG | 309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi10g0768 | 309 | Pfam | Zinc-ribbon | 247 | 305 | IPR039512 | - | |
| Glsi10g0768 | 309 | ProSiteProfiles | Zinc finger CHY-type profile. | 57 | 133 | IPR008913 | GO:0008270 | |
| Glsi10g0768 | 309 | Gene3D | - | 271 | 309 | - | - | |
| Glsi10g0768 | 309 | Pfam | Ring finger domain | 199 | 242 | IPR001841 | - | |
| Glsi10g0768 | 309 | SUPERFAMILY | Zinc hairpin stack | 136 | 193 | IPR037275 | - | |
| Glsi10g0768 | 309 | SUPERFAMILY | CHY zinc finger-like | 61 | 135 | IPR037274 | GO:0008270 | |
| Glsi10g0768 | 309 | CDD | RING-H2_Pirh2-like | 199 | 243 | - | - | |
| Glsi10g0768 | 309 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 42 | 308 | - | - | |
| Glsi10g0768 | 309 | Pfam | CHY zinc finger | 64 | 145 | IPR008913 | GO:0008270 | |
| Glsi10g0768 | 309 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 135 | 199 | IPR017921 | - | |
| Glsi10g0768 | 309 | MobiDBLite | consensus disorder prediction | 29 | 49 | - | - | |
| Glsi10g0768 | 309 | SMART | ring_2 | 200 | 242 | IPR001841 | - | |
| Glsi10g0768 | 309 | SUPERFAMILY | RING/U-box | 198 | 246 | - | - | |
| Glsi10g0768 | 309 | ProSiteProfiles | Zinc finger RING-type profile. | 200 | 243 | IPR001841 | - | |
| Glsi10g0768 | 309 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 194 | 245 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi10g0768 | Glsi-ChrGlsi10 | 4899757 | 4902738 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi10g0768 | 54 | 305 | C2H2 Transcription Factor Family | AT3G18290 | 38.760 | 1.71e-53 | 186 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Glsi10g0768 | 10 | 4899757 | 4902738 | Glsi08g1528 | 08 | 11062025 | 11068406 | CCT |