Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0750 ATGTTGGCGACTTTGATATTGGAGTTGTGTTGGTGGACTTTGATGGATGTTCTCTCACCAGAACTATATATTGAAGGTCTATCCGACGCTTACCCATTGTTGATGGAGCAGACAGGGCACTTGAACAGCAGTCAGCACATCATTGACCTTGCTGGGAGTACTGATGCTTCGATATCTACCTCTCCTCATGATAGATATTTTAGTGGTGTAGATAGATCAGAGCATGAAGATGGTCCCTTAAGTGCAGGACTACCTGTTTCTCAGCCATCACTCTCTCCCTCTGGTGTATCTAGTGGAGCAAATGCAAGGAATTCTTCATACTTAAGACAAGGGGAAACTGGTCGACACAGGAGTCCATTGAATTCTGGGTTTTGGATATCCATTGAACTGGTACTCACAGCAAGCCAGATTGTTGCATCTATTATTGTTTTGTCTTTATCAAGGCATGAGCATCCACACACCCCATTGTCTGCATGGATCGTTGGTTATGCATCTGGATGTGTTGCTATTCTCCCTCTGCTCTATTGGCGTTATTATCACTGTAATCAGGCTCCAGAGCAAGATTCATCCCAACCGCATCAGACCTCTCCTCGAATTAATGTTCCTTCAGGAACATATCTTTCCATTTCCAGAATTAATGGAGAAGGTGATCAGCCTACTGTTGCATTATCCAGAAGCAATCAAGGTTCATGGTTTATGAATGCAAGACTGAAGATACTAATGGAGTACTTAAAGATGGCCTTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGCTGTGTATGGATCTTTGGGGGACATTCATCTGCTGATGAGGCTCCTAACTTGTATAGGTTATGCATAGTGTTTCTTACCTTTTGCCTTATTGGTTATGCTATGCCCTTCGTTCTATGTGCAACAATATGCTGTTGTCTGCCTTGTATAATTTCCATCCTTGGGGCTAGAGAAGACCTGGCACAAACCAAAGGGGCAACCGCCGAATCAATTAATGCTTTGCCAACTTACAAGTTCAAGATGAAGAAAAATACAAATAGTGATGAAAGCAACTCTACTGTTGGTGAAGGTGGAATTGTTGCTGCTGGAACTGAAAAGGAGCGTGTGATCTCTGGAGAGGATGCGGTTTGCTGCATCTGCCTGGAAAAGTATGAAAATAACGATGAGCTGAGAGAATTGACTTGTTCTCATCTTTTCCACAAAGACTGTGTAGATAAGTGGTTGAAGATAAATGCATTATGCCCTCTCTGCAAGAGTGAGGTTAGTGAGAACGTAAGAGAAGGATCAGTCTCGGGAGAAGATGCCAGCCAACGACCGGATGAGGGCAGAGAAGAGAATGGCCCAGTCGATTCCATTAATATATAG 1359 0.4305 MLATLILELCWWTLMDVLSPELYIEGLSDAYPLLMEQTGHLNSSQHIIDLAGSTDASISTSPHDRYFSGVDRSEHEDGPLSAGLPVSQPSLSPSGVSSGANARNSSYLRQGETGRHRSPLNSGFWISIELVLTASQIVASIIVLSLSRHEHPHTPLSAWIVGYASGCVAILPLLYWRYYHCNQAPEQDSSQPHQTSPRINVPSGTYLSISRINGEGDQPTVALSRSNQGSWFMNARLKILMEYLKMALDCFFAIWFVVGCVWIFGGHSSADEAPNLYRLCIVFLTFCLIGYAMPFVLCATICCCLPCIISILGAREDLAQTKGATAESINALPTYKFKMKKNTNSDESNSTVGEGGIVAAGTEKERVISGEDAVCCICLEKYENNDELRELTCSHLFHKDCVDKWLKINALCPLCKSEVSENVREGSVSGEDASQRPDEGREENGPVDSINI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0750 452 Pfam Ring finger domain 375 416 IPR001841 -
Glsi10g0750 452 MobiDBLite consensus disorder prediction 421 452 - -
Glsi10g0750 452 MobiDBLite consensus disorder prediction 431 445 - -
Glsi10g0750 452 FunFam E3 ubiquitin-protein ligase 358 424 - -
Glsi10g0750 452 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 35 419 - -
Glsi10g0750 452 SMART ring_2 375 415 IPR001841 -
Glsi10g0750 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 426 IPR013083 -
Glsi10g0750 452 ProSiteProfiles Zinc finger RING-type profile. 375 416 IPR001841 -
Glsi10g0750 452 MobiDBLite consensus disorder prediction 85 103 - -
Glsi10g0750 452 MobiDBLite consensus disorder prediction 65 103 - -
Glsi10g0750 452 SUPERFAMILY RING/U-box 367 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0750 Glsi-ChrGlsi10 4743258 4748504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0750 27 422 C3H Transcription Factor Family AT1G80400 49.628 2.72e-134 391