Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0746 ATGCTTTTCCATAAGCCTCGTTATATACTCTTCTCTGTTCGGTTTCTGCTGCATAGGCCAAAATTTGTTCCTTTCCTTGGAGTTCCAAATCTACGCTTCTTCTCCTCTTTGGAACGATCATGGACATCTTGGCGGGGTAACCCTCTCATTGATTGGCCCTTCCCAGAACGCGTCCCAAACCCGAAACCGAATCATAACCCGGGCTCCGACCTCTCACCGGATGCGGACTTTAATTTCTCACGGGATGACTTCTCTACCATTGCAAATCTCTTCATCGATCCTTCCATCTCTCCGGGCCCAGCCTTGGATACTGCACTCGACCGGACTGAAATTGAACCGGGTCCGACTCTGCTGCAAGCTATATTCGATCATTTCGATTCTTCCCCCAAGTTACTACGCTCGTTGTTTCTTTGGGCTGAGAGGCGACCTGGGTTCAGACCCAGCGTGACGCTCTTCAACTCCATGATCAATGTTCTAGCCAAATCGAGGGAGTTCGACTCCGCTTGGACTCTGCTTCTTGATCGGATTGACAGACACGAGGAAGCCGCTTTCGTTTCCAGAGATACCTTTGCTATTATGATCAGACGGTATGCTCGTGCAGGTATGCCCCAATCTGCAATTCGAACATTTGAGTATTCTAGAAATTTAAAGTCAATTCTGGATTCCGATTCGGAAATGAGCTTATTTGAGATATTGTTGGATTCGCTTTGTAAAGAAGGGTCTGTCAGAGCAGCTTCAGAGTATTTCCTTCAGAGAAAGAACATGGACCCATGTTGGGATCCATCAATTCGGGTTTATAATATTATGTTAAATGGATGGTTACGGTCAAGGAAACTCAAACAGGCCGAGAGATTGTGGGCAGAGATGAAGAAGGAGAATGTAAGACCAAGTGTTGTGACATACGGCACCCTTGTGGAAGGATATTGCCGGATGCGTCGAATTGAAAAGGCTCTTGAATTGGTTGGTGATATGACCAAAGAAGGGATTGAACCAAATGCAATTGTGTATAATGCAATAATTGATGCATTGGGAGAGGCTGGGAGATTTAAAGAGGCATTGGGGATGTTGGAGCGATTTCTTGTTTTAAAAATGGGCCCCACTGACTCAACTTACAATTCTTTGGTCAAGGGTTTTTGTAAGGCAGGAGATCTTGTCGGTGCCAGTAGGATCCTTAAGATGATGATAAGTAGGGGTTTCGTCCCTAGCCCCACCACCTATAACTACTTCTTTAGGTACTTTTCAAGATGTGGGAAAATTGACGAGGGTATGAACCTTTATGCCAAGATGATTGAATCTGGTTATACCCCTGATCGGCTTACTTACCATCTTCTGGTGAAGATGTTATGTGAAGAGGAGAGATTGGACTTGGCGGTTCAAGTTAGTAAGGAAATGAGGTATAAGGGGTATGACATGGACTTAGCCACAAGTACTATGTTGGTACATTTGCTTTGCAAAATGCATAGGTTGGAAGAGGCTTTTGCGGAATTTGAGGACATGATACGGAGGGGTTTAGTTCCTCAGTATCTCACTTTTCAGAGAATGAATGGTGACTTAAAGAAACATGGGATGACTGAAATGGCACGAAAACTATGCAACTCGATGTCTTCTGTCTCTCATTCTACTAAGTTGCCAAATACATATGTTGAAGACATAGATGAATCACATGCTCGGAGACTATCTATAATGCAGAAGGCCAAAGCATTTTCAGATATGCTGAAAAGCTGTAAGGACCCCAGTGAACTTGCCAAGCATAGAAGTTCATCAGAAAATGCCATCTCAAACGCAAACTGTTTGATAGAGAATATTATGAAAAGGATAAATAAGCCATGA 1830 0.4383 MLFHKPRYILFSVRFLLHRPKFVPFLGVPNLRFFSSLERSWTSWRGNPLIDWPFPERVPNPKPNHNPGSDLSPDADFNFSRDDFSTIANLFIDPSISPGPALDTALDRTEIEPGPTLLQAIFDHFDSSPKLLRSLFLWAERRPGFRPSVTLFNSMINVLAKSREFDSAWTLLLDRIDRHEEAAFVSRDTFAIMIRRYARAGMPQSAIRTFEYSRNLKSILDSDSEMSLFEILLDSLCKEGSVRAASEYFLQRKNMDPCWDPSIRVYNIMLNGWLRSRKLKQAERLWAEMKKENVRPSVVTYGTLVEGYCRMRRIEKALELVGDMTKEGIEPNAIVYNAIIDALGEAGRFKEALGMLERFLVLKMGPTDSTYNSLVKGFCKAGDLVGASRILKMMISRGFVPSPTTYNYFFRYFSRCGKIDEGMNLYAKMIESGYTPDRLTYHLLVKMLCEEERLDLAVQVSKEMRYKGYDMDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGLVPQYLTFQRMNGDLKKHGMTEMARKLCNSMSSVSHSTKLPNTYVEDIDESHARRLSIMQKAKAFSDMLKSCKDPSELAKHRSSSENAISNANCLIENIMKRINKP 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0746 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Glsi10g0746 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Glsi10g0746 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Glsi10g0746 609 SUPERFAMILY HCP-like 239 444 - -
Glsi10g0746 609 NCBIfam pentatricopeptide repeat 265 297 IPR002885 -
Glsi10g0746 609 NCBIfam pentatricopeptide repeat 405 437 IPR002885 -
Glsi10g0746 609 NCBIfam pentatricopeptide repeat 299 333 IPR002885 -
Glsi10g0746 609 NCBIfam pentatricopeptide repeat 334 366 IPR002885 -
Glsi10g0746 609 NCBIfam pentatricopeptide repeat 477 506 IPR002885 -
Glsi10g0746 609 NCBIfam pentatricopeptide repeat 370 402 IPR002885 -
Glsi10g0746 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Glsi10g0746 609 Gene3D Tetratricopeptide repeat domain 287 360 IPR011990 GO:0005515
Glsi10g0746 609 Gene3D Tetratricopeptide repeat domain 120 257 IPR011990 GO:0005515
Glsi10g0746 609 Gene3D Tetratricopeptide repeat domain 361 598 IPR011990 GO:0005515
Glsi10g0746 609 Pfam PPR repeat family 331 380 IPR002885 -
Glsi10g0746 609 Pfam PPR repeat family 405 449 IPR002885 -
Glsi10g0746 609 Pfam PPR repeat family 261 310 IPR002885 -
Glsi10g0746 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Glsi10g0746 609 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 88 450 - -
Glsi10g0746 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Glsi10g0746 609 Pfam PPR repeat 476 504 IPR002885 -
Glsi10g0746 609 Pfam PPR repeat 189 211 IPR002885 -
Glsi10g0746 609 Pfam PPR repeat 152 172 IPR002885 -
Glsi10g0746 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0746 Glsi-ChrGlsi10 4720513 4722690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0746 144 553 Glycosyltransferase AT1G05670 25.163 4.26e-43 163