Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0738 ATGTCACAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAGGCTGAAGGAAAAGTCTCCTCGGATCCTGTTGCAATTGATGCCCCTGGAGGTTTTCTCTTCGAGTGGTGGTCAGTTTTTTGGGATATATTTATCGCCAGGACTAATGAGAAGCACTCTGAGGTTGCTGCATCTTATATTGAGACACAGTTAATTAAGGCAAGGGAGCAGCAACAGCAGCAACAACAGCAGCAGTCACAATCCCAGCAGTCACAGCATCAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCACATGCAGATGCAACAGCTCTTGTTACAGAGGCATGCACAACAGCAGCAGCAGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCAGCAACAACAGCAACCACAGCCGCAGCAACAGCAGCCACCACCACAACAGCAGAGAAGGGATGGAGCTCATCTTTTAAATGGCAGTACAAATGGGTTAGTTGAAAACCCACTCATGCGGCAGAACCCTGGTACTGCAAATGCACTTGCTACAAAGATGTATGAAGAAAGGTTAAAACTACCTATTCAGAGGGATTCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTATTGGACCCATCTCATGCCTCAATATTGAAGTCAGCTGCAGCTTCTGGCCAGCCTTCAGGGCAAGTGTTGCATGGTGCTGGTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACTCCGGACATAAAGAGCGAGATTAATCCTGTGTTGAATCCAAGAGCTGCAGGTCCTGAAGGATCATTGATAGGAATTCCTGGATCAAATCAAGGTAGCAACAATTTGACTCTCAAGGGGTGGCCACTTACAGGGTTGGATCAACTACGCTCTGGTCTTCTACAGCAGCAAAAGCCTTTTATGCAGACTCAGCCCTTTCATCAACTTCAAATGTTGACACCGCAACATCAGCAGCTTATGCTTGCACAACAAAATCTGGCATCACCATCTGCAAGTGATGATAGTCGACGACTTAGAATGCTTTTGAATAATAGGAATGTGGCCCTAAATAAGGATGGTCTTCCAAACCCTGTTGGTGATGTGGTATCAAACGTTGGATCACCTCTTCAGGCTGGCAGCCCTCTTTTACCTCGTGGAGATACAGATATGCTAATGAAGTTAAAATTGGCTCAGTTACAGCAGCAACATCAACAACAACAGAACACTAATCCACAGCAGCAGCAACTTCAACAGCACGCTCTTTCAAATCAGCAATCTCAGACTTCAAATCATAACATGCATCAACAAGATAAAGTGGGAGGTGGTGGTGGTAGTGTCACTGTGGATGGGAGCATGTCAAACTCTTTTAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGGCTGTATCTTCTGGTCCTGCCAATAGCTCAGGAACGGCAAATACGGCTGGCCCATCTCCAAGCTCAGCACCCTCAACTCCTTCAACTCATACTGGAGATGTGATTTCAATGCCTACGTTGCCTCGTAACGGTAGTTCTTCGAAGCCTCTAATGATCTTTGGCACTGATGGCACTGGAACTCTTACATCACCTTCAAATCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATATGGATCGTTTTGTTGAAGATGGATCTCTTGATGACAATGTGGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGCTTCTCATTTGCTGAAGAAAATTCAGTACGAGCTAGTATGAGCAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTTGCGAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTACACAGATTCTTTGAAGCAAAAAAATACTCTTGAAGAACATTCTTCTTTAATAACTGATGTCCGTTTCAGTCCAAGCATGCCCCGACTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCGCTTCGCACATTTACGGGACATTCTGCATCTGTTATGTCACTTGATTTTCATCCAAATAAAGATGATCTTATCTGCTCCTGTGATGGTGATGGTGAAATACGATATTGGAGTATAAATAATGGCAGCTGTACTAGAGTTTCCAAGGGTGGCACTGCCCAGATGAGATTTCAACCTCGGTTAGGGAGGTACCTTGCTGCTGCTGCAGAGAACGTTGTCTCTATACTTGACGTGGAGACACAAGCATGCCGATATTCATTAGAGGGACATACAAAGCCTATACATTCTGTGTGCTGGGACCCATCTGGAGAGTTCCTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGAACAGGTAGTGAAGGGGAATGTGTTCATGAGCTAAGTTGTAATGGGAATAAGTTTCACTCTTGTGTTTTCCATCCGACATATTCTTCATTGCTGGTCATTGGCTGTTACCAGTCTTTGGAGCTTTGGAACATGAGTGAGAACAAGACAATGACTCTGTCGGCTCATGAAGGACTAATTGCTGCCTTGGCTGTGTCAACTGTAACTGGTTTGGTTGCTTCGGCCAGTCATGACAAGTTTGTGAAGCTCTGGAAGTAA 2763 0.4528 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQSQSQQSQHQQQQQQQQQQQQQQQQQQQQQQQHMQMQQLLLQRHAQQQQQQQQQQQQQQQQQQQQQPQPQQQQPPPQQQRRDGAHLLNGSTNGLVENPLMRQNPGTANALATKMYEERLKLPIQRDSLDDAAMKQRFGENMGQLLDPSHASILKSAAASGQPSGQVLHGAGGGMSQQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLTGLDQLRSGLLQQQKPFMQTQPFHQLQMLTPQHQQLMLAQQNLASPSASDDSRRLRMLLNNRNVALNKDGLPNPVGDVVSNVGSPLQAGSPLLPRGDTDMLMKLKLAQLQQQHQQQQNTNPQQQQLQQHALSNQQSQTSNHNMHQQDKVGGGGGSVTVDGSMSNSFRGNDQASKNQTGRKRKQAVSSGPANSSGTANTAGPSPSSAPSTPSTHTGDVISMPTLPRNGSSSKPLMIFGTDGTGTLTSPSNQLWDDKDLELQADMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFSFAEENSVRASMSKVVCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKNTLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLEGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHEGLIAALAVSTVTGLVASASHDKFVKLWK 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0738 920 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 920 - -
Glsi10g0738 920 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 721 759 - -
Glsi10g0738 920 MobiDBLite consensus disorder prediction 171 200 - -
Glsi10g0738 920 SUPERFAMILY WD40 repeat-like 636 920 IPR036322 GO:0005515
Glsi10g0738 920 SMART WD40_4 629 668 IPR001680 GO:0005515
Glsi10g0738 920 SMART WD40_4 881 920 IPR001680 GO:0005515
Glsi10g0738 920 SMART WD40_4 757 793 IPR001680 GO:0005515
Glsi10g0738 920 SMART WD40_4 796 834 IPR001680 GO:0005515
Glsi10g0738 920 SMART WD40_4 840 879 IPR001680 GO:0005515
Glsi10g0738 920 SMART WD40_4 671 710 IPR001680 GO:0005515
Glsi10g0738 920 SMART WD40_4 714 754 IPR001680 GO:0005515
Glsi10g0738 920 Coils Coil 105 128 - -
Glsi10g0738 920 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 678 713 - -
Glsi10g0738 920 ProSiteProfiles Trp-Asp (WD) repeats profile. 888 920 IPR001680 GO:0005515
Glsi10g0738 920 CDD WD40 636 920 - -
Glsi10g0738 920 MobiDBLite consensus disorder prediction 435 473 - -
Glsi10g0738 920 MobiDBLite consensus disorder prediction 435 578 - -
Glsi10g0738 920 ProSitePatterns Trp-Asp (WD) repeats signature. 697 711 IPR019775 -
Glsi10g0738 920 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 888 920 - -
Glsi10g0738 920 Gene3D - 611 768 IPR015943 GO:0005515
Glsi10g0738 920 Pfam WD domain, G-beta repeat 883 920 IPR001680 GO:0005515
Glsi10g0738 920 Pfam WD domain, G-beta repeat 676 710 IPR001680 GO:0005515
Glsi10g0738 920 Pfam WD domain, G-beta repeat 717 754 IPR001680 GO:0005515
Glsi10g0738 920 Pfam WD domain, G-beta repeat 799 833 IPR001680 GO:0005515
Glsi10g0738 920 Pfam WD domain, G-beta repeat 641 667 IPR001680 GO:0005515
Glsi10g0738 920 ProSiteProfiles Trp-Asp (WD) repeats profile. 678 713 IPR001680 GO:0005515
Glsi10g0738 920 SMART Lish 8 40 IPR006594 GO:0005515
Glsi10g0738 920 Pfam LisH 10 36 IPR006594 GO:0005515
Glsi10g0738 920 ProSiteProfiles Trp-Asp (WD) repeats profile. 803 843 IPR001680 GO:0005515
Glsi10g0738 920 FunFam Transcriptional corepressor LEUNIG 764 920 - -
Glsi10g0738 920 Coils Coil 132 162 - -
Glsi10g0738 920 ProSiteProfiles Trp-Asp (WD) repeats profile. 636 677 IPR001680 GO:0005515
Glsi10g0738 920 Coils Coil 433 453 - -
Glsi10g0738 920 MobiDBLite consensus disorder prediction 484 578 - -
Glsi10g0738 920 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Glsi10g0738 920 MobiDBLite consensus disorder prediction 155 200 - -
Glsi10g0738 920 ProSiteProfiles Trp-Asp (WD) repeats profile. 721 763 IPR001680 GO:0005515
Glsi10g0738 920 Gene3D - 769 920 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0738 Glsi-ChrGlsi10 4679724 4688936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0738 654 835 U-box Gene Family AT2G33340 33.333 1.68e-19 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Glsi10g0738 WD40 0.13 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0738 10 4679724 4688936 Glsi08g1548 08 11161714 11173083 CCT