Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0733 ATGTCAACCTTTCTACCACGCCCTATTTGCCATTTACCGTGCTTCAGAATAAAGTCTCTACCTGCTAGGATACTTAACCAACACCGGGAACTATTCCTTGATCTTTTAGCATGCTTAAAGTCTGTGTTAGGAAAAGCCATCTGGGGGAGATTGCGAACTACAGGCCGAACAATATCTAGCTCAGAGATGGTGGGGGGTCCGAGTTCGTGGTCGAGGGCGTTGCTGATGATCTCTCCATATACATTCTCTGCCGTCGGCATCGCCATCTCTATTGGCGTCTCTGTCCTCGGGGCTGCCTGGGGGATTTATATAACTGGAAGTAGCTTGATCGGTGCTGCCATCAAAGCTCCCCGAATTACTTCCAAGAATCTTATTAGTGTGATCTTCTGTGAAGCTGTTGCTATATATGGTGTTATCGTGGCCATTATTCTACAAACAAAATTAGAGAGCGTCCCGCTATCAAATATCCATGCACCCGAGTCTCTTCGAGCAGGATATGCAATATTTGCCTCGGGAATTATTGTGGGTTTCGCAAATCTTGTGTGTGGGTTGTGTGTAGGAGTGATTGGAAGCAGCTGTGCATTGTCCGATGCTCAAAACTCCTCACTTTTTGTGAAGATTCTTGTGATTGAGATTTTTGGTAGCGCGCTTGGGCTATTTGGAGTTATTGTGGGAATTATCATGTCAGCTCAAGCTACATGGCCTTCAAAAATTTAA 717 0.4533 MSTFLPRPICHLPCFRIKSLPARILNQHRELFLDLLACLKSVLGKAIWGRLRTTGRTISSSEMVGGPSSWSRALLMISPYTFSAVGIAISIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPLSNIHAPESLRAGYAIFASGIIVGFANLVCGLCVGVIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPSKI 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0733 238 Gene3D - 80 234 IPR035921 -
Glsi10g0733 238 PRINTS Vacuolar ATP synthase 16kDa subunit signature 98 122 IPR000245 GO:0033179|GO:0046961|GO:1902600
Glsi10g0733 238 PRINTS Vacuolar ATP synthase 16kDa subunit signature 124 148 IPR000245 GO:0033179|GO:0046961|GO:1902600
Glsi10g0733 238 PRINTS Vacuolar ATP synthase 16kDa subunit signature 207 230 IPR000245 GO:0033179|GO:0046961|GO:1902600
Glsi10g0733 238 PRINTS Vacuolar ATP synthase 16kDa subunit signature 180 206 IPR000245 GO:0033179|GO:0046961|GO:1902600
Glsi10g0733 238 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 68 232 - -
Glsi10g0733 238 FunFam V-type proton ATPase proteolipid subunit 80 235 - -
Glsi10g0733 238 SUPERFAMILY F1F0 ATP synthase subunit C 77 147 IPR035921 -
Glsi10g0733 238 SUPERFAMILY F1F0 ATP synthase subunit C 161 229 IPR035921 -
Glsi10g0733 238 CDD ATP-synt_Vo_c_ATP6F_rpt2 164 228 - -
Glsi10g0733 238 CDD ATP-synt_Vo_c_ATP6F_rpt1 82 144 - -
Glsi10g0733 238 Pfam ATP synthase subunit C 169 228 IPR002379 GO:0015078|GO:0033177|GO:1902600
Glsi10g0733 238 Pfam ATP synthase subunit C 86 144 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0733 Glsi-ChrGlsi10 4637703 4641261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0733 68 237 Primary Pumps ATPases(2) AT2G25610 91.176 4.66e-104 299