Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0729 ATGTCCGCGAGTAGAAAAAAGATGAATATATTAGCAAACTCAATATTTTGTAGCAGGGCAGAGGAGAAAGAGATAGAGATAGAACAGATGTCCAGGGACGATGGCAGCCAATACAGCATCACCGGTGCCCCTCTTCCTTCTCTTGGTGCCACAGCCGCCCACAACAACCGAAGACTCAAGCTCCGACCCTTCGTTATCTCCCCCTTTAACCCACGTTACAGATTCTGGGAGACTTTTCTTGTATTTTTAGTTTTCTACACTGCATGGGTTTGCCCGTTTGAATTTGGATTCCTTGAAAAACCAAAGGGTCCTCTTGCTATAGCCGATAATGTTGTCAATGGATTTTTTGCCATTGACATTGTTCTGACCTTCTTTGTTGCCTACCTCGACAAAAACTCTTATCTTCTTATCGACAACCCGAAATTGATTGCTTTGAGATATGCCAAAACCTGGTTGGCCTTTGATGTCATATCCACAATCCCTTACGAACTTGCTCATAGTGTATTGCCCACTCCTCTTCAGACATATGGGTACTTTAATATGCTCCGTCTTTGGCGTCTCCGTCGAGTCAGTGCCATGTTTGCAAGATTAGAAAAGGACAGGAATTTTAGCTACTTCTGGGTGCGCTGTTCAAAGCTTATATGTGTTACTCTGTTTACAGTGCATTTTTCTGCCTGCTTTTACTATTGTCTTGCTGCACATCATGACCCAAAGAGTACATGGCTTGGGCTAGTTGCTAATGGTGATGAGCAGAATCTGACGGACCACTATGTAACATCGGTATACTGGGCCATAGTTACTCTTTCAACCGTTGGTTATGGTGATTTGCATCCTGTAAATTCAAAGGAGATGTTGTTTGACATCTTCTATATGCTCTTTAATCTTGGACTTACTGCATATCTGATAGGAAACATGACCAACTTGGTTGTCCATCGCACAGGTCGAACTAGGAAATATAGAGACACTGTCCAAGCTGCTACAGGTTTTGCACATCGGAATCAATTACCTATCCGCTTGCAAGAACAGATGCTTGCTCATCTGTCTATGAAGTACAGAACAGATTTAGAAGGACTGCAGCATCAAGAGATTATTGATTCTCTTCCAAAAGCCATTCGATCTAGCATCTCACACTTCCTCTTCTATTCACTTGTTGACAAAGTCTACTTGTTTCGTGGCGTGTCAAATGACCTACTTTTTCAACTGGTCACAGAAATGAAAGCCGAGTATTTTCCTCCAAAGGAAGACGTGATTTTACAGAATGAAGCTCCAACAGACTTTTATATATTGGTTACTGGTGCAGCCGAGCTCATCGTACAAAAGAACGGAATAGAACAGGTTGTTGGTGAGGCAAAGACGGGAGATGTAGTTGGAGAGATAGGTGTGCTGTGTTACAGGCCGCAGCTATTTTCAGTTCGGACCAAACGATTGAGCCAGCTTCTTCGTCTGAACCGCACTTCACTTCTAAGTCTTGCTCATTCAAATGTCGGAGATGGGACAATAATTATGAACAATTTTCTTCATCATCTGAAAGAATTAAAGGATCCAGTGATGGATGGAGTTTTGGCAGAAACAGAGGCCATGCTGGCTCGGGGCAGAATGGAGTTGCCTATCAGTCCATGCTTTGCTGCGAACAGAGGTGACGATCTGTTGTTGCATCATTTGCTGAAGAGGGGTTCAGATTCAAATGAAGCAGATAAGAACGGAAGGACGGCACTGCATATCGCTGCATCTAAAGGCAGCGAGCACTGTGTTGTTCTGCTTCTAGAATATGGTGCCGACCCCAACAGCAAAGATTTAGATGGAAGTATCCCACTATGGGAAGCAATGATGGGAAGGCATGAATCTGTAATAAAACTTCTCATAGACAATGGAGCAGAGATATCTTGTGACGACGTAGGCCATCTTGCATGCACTGCCGTGGAGCAAAATGACCTGGAATTGCTCAAGGACATTGTTCGATATGGTGGGGATGTGAGGCAGCCCAAAAGCAATGGGACCACAGCACTTCACACGGCAGTATGCGAAGGAAACACCGAAATAGTTAAGTTCCTGCTAGTCCAAGGAGCAGACATTGATAGGGCAGATGTTAATGGATGGACTCCTAGGGCTTTGGCAGACCATCAAGGACAGGAAGAAATCAAAGCTATATTCCAGAACATTCGAGCGGGAAAAAAACCATTCATTATTCCAAGGTCATACCTTGGGAGGTTTCAAAGTGAACCCACAATATCTGCCCTTTCCAGAGGAAGCGTGCCACCCGGTCAAGAGGCGACTTGGTTGGACAATCATCAACGGAAGCAAAGGGCCAACAATTTTCACAATTCTTTGTTTGGGATCGTGTCTGCTGCCAATCGGGATCAAAGATCTACGGGTGCATCTCAGGACAATCATGCTATTGCGCATGAATTCCAAGCCAGAGTAATTCTGAGTTGTCCGGCAAAAGGCCAACACGCTGGAAAGCTTGTTTTTCTGCCCAAGTCCCTTCAAGAACTGCTAGACCTGGGTTCCAATAAGTTTGATTTCTCTCCCACCAAAATTTTGACTACAGAAGGAGCTGAAGTTGACGATATAAACGTTATCAGAGATGGTGATCATCTCATTCTTGCACGTGATCACGATGCCCAATGA 2628 0.4429 MSASRKKMNILANSIFCSRAEEKEIEIEQMSRDDGSQYSITGAPLPSLGATAAHNNRRLKLRPFVISPFNPRYRFWETFLVFLVFYTAWVCPFEFGFLEKPKGPLAIADNVVNGFFAIDIVLTFFVAYLDKNSYLLIDNPKLIALRYAKTWLAFDVISTIPYELAHSVLPTPLQTYGYFNMLRLWRLRRVSAMFARLEKDRNFSYFWVRCSKLICVTLFTVHFSACFYYCLAAHHDPKSTWLGLVANGDEQNLTDHYVTSVYWAIVTLSTVGYGDLHPVNSKEMLFDIFYMLFNLGLTAYLIGNMTNLVVHRTGRTRKYRDTVQAATGFAHRNQLPIRLQEQMLAHLSMKYRTDLEGLQHQEIIDSLPKAIRSSISHFLFYSLVDKVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDFYILVTGAAELIVQKNGIEQVVGEAKTGDVVGEIGVLCYRPQLFSVRTKRLSQLLRLNRTSLLSLAHSNVGDGTIIMNNFLHHLKELKDPVMDGVLAETEAMLARGRMELPISPCFAANRGDDLLLHHLLKRGSDSNEADKNGRTALHIAASKGSEHCVVLLLEYGADPNSKDLDGSIPLWEAMMGRHESVIKLLIDNGAEISCDDVGHLACTAVEQNDLELLKDIVRYGGDVRQPKSNGTTALHTAVCEGNTEIVKFLLVQGADIDRADVNGWTPRALADHQGQEEIKAIFQNIRAGKKPFIIPRSYLGRFQSEPTISALSRGSVPPGQEATWLDNHQRKQRANNFHNSLFGIVSAANRDQRSTGASQDNHAIAHEFQARVILSCPAKGQHAGKLVFLPKSLQELLDLGSNKFDFSPTKILTTEGAEVDDINVIRDGDHLILARDHDAQ 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0729 875 Gene3D - 537 719 IPR036770 -
Glsi10g0729 875 SUPERFAMILY Ankyrin repeat 541 720 IPR036770 -
Glsi10g0729 875 Gene3D - 74 310 - -
Glsi10g0729 875 PRINTS EAG/ELK/ERG potassium channel family signature 301 310 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi10g0729 875 PRINTS EAG/ELK/ERG potassium channel family signature 86 93 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi10g0729 875 PRINTS EAG/ELK/ERG potassium channel family signature 120 129 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi10g0729 875 PRINTS EAG/ELK/ERG potassium channel family signature 283 294 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi10g0729 875 PRINTS EAG/ELK/ERG potassium channel family signature 109 119 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi10g0729 875 PRINTS EAG/ELK/ERG potassium channel family signature 257 274 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi10g0729 875 ProSiteProfiles cAMP/cGMP binding motif profile. 389 490 IPR000595 -
Glsi10g0729 875 PANTHER POTASSIUM CHANNEL AKT1 36 870 IPR045319 GO:0005249|GO:0006813
Glsi10g0729 875 Pfam Ion transport protein 74 313 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi10g0729 875 ProSiteProfiles Ankyrin repeat region circular profile. 567 598 - -
Glsi10g0729 875 ProSiteProfiles Ankyrin repeat profile. 600 632 IPR002110 GO:0005515
Glsi10g0729 875 SMART ANK_2a 567 596 IPR002110 GO:0005515
Glsi10g0729 875 SMART ANK_2a 664 693 IPR002110 GO:0005515
Glsi10g0729 875 SMART ANK_2a 600 629 IPR002110 GO:0005515
Glsi10g0729 875 ProSiteProfiles Ankyrin repeat region circular profile. 664 695 - -
Glsi10g0729 875 SMART cnmp_10 389 506 IPR000595 -
Glsi10g0729 875 SUPERFAMILY Voltage-gated potassium channels 68 310 - -
Glsi10g0729 875 ProSiteProfiles Ankyrin repeat profile. 567 599 IPR002110 GO:0005515
Glsi10g0729 875 FunFam Potassium channel KAT3 75 311 - -
Glsi10g0729 875 Gene3D Jelly Rolls 355 514 IPR014710 -
Glsi10g0729 875 ProSiteProfiles KHA domain profile. 806 875 IPR021789 -
Glsi10g0729 875 PRINTS Ankyrin repeat signature 568 583 IPR002110 GO:0005515
Glsi10g0729 875 PRINTS Ankyrin repeat signature 680 694 IPR002110 GO:0005515
Glsi10g0729 875 ProSiteProfiles Ankyrin repeat region circular profile. 600 631 - -
Glsi10g0729 875 FunFam Potassium channel KAT2 377 513 - -
Glsi10g0729 875 CDD CAP_ED 389 494 IPR000595 -
Glsi10g0729 875 SUPERFAMILY cAMP-binding domain-like 315 509 IPR018490 -
Glsi10g0729 875 ProSiteProfiles Ankyrin repeat profile. 664 696 IPR002110 GO:0005515
Glsi10g0729 875 Pfam KHA, dimerisation domain of potassium ion channel 806 868 IPR021789 -
Glsi10g0729 875 Pfam Ankyrin repeats (3 copies) 639 713 IPR002110 GO:0005515
Glsi10g0729 875 Pfam Ankyrin repeats (3 copies) 541 629 IPR002110 GO:0005515
Glsi10g0729 875 Pfam Cyclic nucleotide-binding domain 409 493 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0729 Glsi-ChrGlsi10 4614355 4620037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0729 28 871 Ion Channels AT2G25600 63.403 0.0 1099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0729 10 4614355 4620037 Glsi10g0729 10 4614355 4620037 ECH