Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0705 ATGGGACTCTTCAAAACCCTAACCTCACTACCAACCTTCTATCCGAATCGTCTCTTCTCGCAGAACATGGGAGAAACAAAAGACGAAGGATACGAGGAAGAGCTTCTTGACTATGAAGAGGAAGAAGACAAGGCGCCTGACTCCATCGGGACTAAAGTCAACGGTGAAGCTGTCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCAGAGCTCCTTAGGGCTATAGTGGACTCAGGATTTGAACATCCATCTGAAGTGCAACATGAGTGCATACCTCAAGCAATCCTTGGAATGGATGTATTATGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTGTTATCAACATTGCAGCAGATTGATCCTGTTGCTGGCCAAGTTTCTGCACTTGTTTTGTGTCATACAAGGGAACTAGCTTACCAGATATGTCATGAGTTTGAGAGGTTCAGCACATACTTGCCTGATCTCAAGGTTGCTGTCTTCTATGGGGGCGTCAACATTAAAGTTCACAAGGATCTGTTGAAAAATGAATGCCCTCATATTGTTGTTGGAACACCTGGAAGAATACTAGCACTGACCAGGGATAAGGACCTTTCATTAAAGAATGTTAGGCATTTCATTTTGGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGGAGAGATGTGCAAGAGATTTTCAAGATGACACCTCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCCATGGAAATTTATGTCGATGACGAGGCCAAGTTGACCCTTCATGGACTTGTTCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGCAAGTTGAATGATCTTCTTGATGCACTTGACTTCAATCAAGTTGTCATTTTTGTAAAAAGTGTCAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATCCATTCTGGCATGTCCCAGGAGGAAAGGTTAAAGCGTTATAAAGGATTTAAGGAGGGCCATACTAGGATTCTTGTAGCAACAGATTTGGTTGGTAGGGGAATTGACATTGAACGTGTCAACATAGTTATAAACTATGACATGCCTGATTCTGCAGACACGTACTTGCACAGGGTTGGCAGAGCCGGAAGGTTTGGTACCAAAGGCCTTGCAATTACATTTGTTTCATGTGCTGCTGATGTCGATGTTCTCAACAATGTTCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACATGCCATCATAG 1350 0.4267 MGLFKTLTSLPTFYPNRLFSQNMGETKDEGYEEELLDYEEEEDKAPDSIGTKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0705 449 FunFam DEAD-box ATP-dependent RNA helicase 56-like 56 274 - -
Glsi10g0705 449 SMART ultradead3 87 288 IPR014001 -
Glsi10g0705 449 Gene3D - 64 280 IPR027417 -
Glsi10g0705 449 CDD SF2_C_DEAD 285 414 - -
Glsi10g0705 449 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 68 96 IPR014014 GO:0003724
Glsi10g0705 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 416 IPR027417 -
Glsi10g0705 449 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 99 272 IPR014001 -
Glsi10g0705 449 CDD DEADc_DDX39 67 274 - -
Glsi10g0705 449 Pfam Helicase conserved C-terminal domain 298 405 IPR001650 -
Glsi10g0705 449 FunFam DEAD-box ATP-dependent RNA helicase 281 449 - -
Glsi10g0705 449 Pfam DEAD/DEAH box helicase 93 258 IPR011545 GO:0003676|GO:0005524
Glsi10g0705 449 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 67 423 - -
Glsi10g0705 449 Gene3D - 281 448 IPR027417 -
Glsi10g0705 449 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 284 445 IPR001650 -
Glsi10g0705 449 SMART helicmild6 324 405 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0705 Glsi-ChrGlsi10 4491803 4497667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0705 23 449 Eukaryotic Initiation Factors Gene Family AT5G11200 83.582 0.0 759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0705 10 4491803 4497667 Glsi08g1584 08 11363778 11369554 CCT
Glsi10g0705 10 4491803 4497667 Glsi10g0705 10 4491803 4497667 ECH
Glsi08g1584 08 11363778 11369554 Glsi10g0705 10 4491803 4497667 ECH