Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0690 ATGGTTCGAATGCCGATACACAATGGTCATGCGGGTTCGGCCAATAGCAGAATTTGCCCATCTGCATCATCACGTGGGCTTCACAAGGTCTACCCTCTGTTATGCTCTGGACCAGCACTCCCTTGTGCTGTATTGGTTTTGATTAGCTTGTTAGGTCACATGGAGCTTCAGTTAGGTCTGGCTCTCCCTATTCACAATCCCATCGAGGGATTCGACCTAACCAATGGTGGCTTAGAGAGTTCAGAGTTATCGAGGCCCAGTTGCTGTCTGAAAAGCTACAAACATGTCAAAAACAAGCGTAGCTTTGAAGAATCATTTGGACAATCTTTGAAACCCCTGCCTTTACTGGTATGGAGCGGACAACCAAACGAGGAAGATGACCGCAGTGGAAAGAAAAACAGAAACACTTACACAATAAACGAGAATAACGAAGAAGAAAACCATGTGGTGGGGTGGCCACCTATTAAATCGTGGAGGAAGAAGAAATTCCATCAACACCCCAGAGTCCAGATCAGGAACGATAGGATGCCAGCTGAGAACGAAAGCAGGGGACCAAACTCCTTATTTGTCAAGGTTAAGATGGAAGGGGTAGCAATAGGAAGGAAGATCGACTTGAGGCTGTACAACTCTTACCAAACTCTTACAAATAAGTTAATTAGCATGTTTGCTAAATACCAAAAATTTAAGGAAGATGGGGCAAATTATACACTCGCTTATCAAGACGAGCAAGGGGACTGGCTGCTTGCTGGAGATGTTCCGTGGCAATCCTTCATTGATTCCGTGAAACGTTTGGAGATATTAAGAAATGGCATTGAAGCTACCTGA 825 0.4473 MVRMPIHNGHAGSANSRICPSASSRGLHKVYPLLCSGPALPCAVLVLISLLGHMELQLGLALPIHNPIEGFDLTNGGLESSELSRPSCCLKSYKHVKNKRSFEESFGQSLKPLPLLVWSGQPNEEDDRSGKKNRNTYTINENNEEENHVVGWPPIKSWRKKKFHQHPRVQIRNDRMPAENESRGPNSLFVKVKMEGVAIGRKIDLRLYNSYQTLTNKLISMFAKYQKFKEDGANYTLAYQDEQGDWLLAGDVPWQSFIDSVKRLEILRNGIEAT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0690 274 SUPERFAMILY CAD & PB1 domains 182 266 - -
Glsi10g0690 274 MobiDBLite consensus disorder prediction 117 141 - -
Glsi10g0690 274 Pfam AUX/IAA family 94 269 IPR033389 -
Glsi10g0690 274 Gene3D - 182 273 - -
Glsi10g0690 274 MobiDBLite consensus disorder prediction 124 141 - -
Glsi10g0690 274 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 54 269 IPR003311 GO:0005634|GO:0006355
Glsi10g0690 274 ProSiteProfiles PB1 domain profile. 187 274 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0690 Glsi-ChrGlsi10 4414490 4417002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0690 175 266 B3 DNA Binding Superfamily AT1G59750 35.870 1.50e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi10g0690 AUX_IAA 2e-40 CL0072