Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0673 ATGGACCAGACATGGACGCCTGTGGTAAGTGACTATGATAGGCCATTGGTCTTATCATATGTAGATGAGATGGCTGGGGCTGTTTATCATTTAGTCTGTGACACCGATTATAAATCAGTCGGCCTCAAGCAAACTGAAAAGAATCTAAAGAGGGACATTTTGAAGAACCCCAATTTTTCAGATGAGACCCCTTCATCAGTTTTATCTGATATACCAATGATGCTCAGCAGGCTTCAGCGTGAAAGTGGGTTCTACTTTGACATGAAATATTTTGAGGACACGGTGCTTGCTGGGAAATGGGATGACGCTGAGAGCTATCTATCTAGTTTTACAAGCATTGATGACAATAGGCACTCAACCAAGATATACTTTGAATTGAGGAAACAGAAATTCCTTGAGGCATTGGATATAAATGATCGTGCCAAGGCTTTAGATATCCTCATCAAGGATCTAAAAGTTTTTTCTCAAGGGCATGAAGAGCTGTTCAAAGACATGACTCAGCTTTTGACAATTAATAATATAAGGGATCATGAATCACTTTCAGCTTATGAAGATACAAATTCTGTGAGGAAGATTGTTATACAGGATATTAAGAAAATCATTGAGGCAAATCCTCTGTTTAATGGAAAGCTTAAATTTCCAGCCATTAAATGTCAGAGGTTACGCCATCTTCTAAACCAAAGCTTAAATTGGCAGCATCTACTTTGTAAAGATCCTCTTCCAGATCCTGTTATTCAATCCCTCTTGGTGGACCATGTTTGTAAACCATGTTTGAATATTTCAATAGCGCAATCGGATGACTTTAGTTCAGTTGTAAGGTCTTGTCCACCTTTGTCCAAGAGTGGTGATTGCTGCCTATCTACTGTAACAGATTCGGCACTCTTTCATGCTGCTAACAAAAACCCAGAAACAGCTGTGGAGGTTGTAGGGGATCCTAATAAAATATCCAAGGGAAGGCCCTGCCAGGCTTTAGATGAGGTGACCTCAGCGATAGCAAATGACCTTCCCAGGACTGTTGTTCAGACATTGAAAGATGATTCGCCTCCTAATAGCATGGATTTTCATCCTATTTGGCATACTGTTCTTCTAGTTGGAAGTCATATTGGCAATATAGGACTTTGGGATGTTACTTCCAGTGAGAAGTTGCTTTCTAGAAACTTTGAAGTTTGGAATATTGGAGCTTGCTCAACCAGTTTCAAGGCAGCCCTGGAAAAAGACTTGCGTGTTTCTGTTAACAGAATCATGTGGAGCCCTGATGGTTCATTGTTTGGGGTTGCATTTTCAAAACACATTGTTCAATTATATTTCTATCGTGGTGGGAATCACATTTGCCAGCATTTAGAAGTTGAAGCTCATGATGGCAGTGTCAATGATCTAGCATTTTCTTCTCTTCACCAGCAATTATTAGTCATAACATGTGGTGACGATAAGACAATAAAGGTGTGGGATACAAAAACTGGTGAGAGATGTTATACTTTTGATGGTCACGATGCTCCTGTTTATTCTATCTGTCCTCACATGAAGGAACATGTTCATTTTATCTTTTCAACTTCCATTGATGGAAAGATTAAGGCATGGTTATATGATAATATGGGCGCCAGAGTTGATTTTGATGCCCCTGGTTGTGGATACACCAAATTGGCTTACAGTGCTGATGATCAAAGACTTTTTTCATGTGGAACTAGTAAAGATGGAGAGCCATATCTTGTGGAATGGGATGAAAGTGAAGGATATATAAAAAGATTGTATGAGGGACTTAAGGTTCCATGTTTTTCTACCATCAATTTTGATACAACCAAGAACCGCCTTTTGGCTGCTGGTGATGACCATATGATTAAATTTTGGGATATGGATAATGTAAAGCTTGGGACAAGCACTGATGCCAATGGAGGCCTACCAGCGCATCCATGCATTCGCTTCAACAAAGAGGGCAGATTACTGGCTGTTGCTGCGAAAGAAAATGAAATCAAAATCTTAGCAACTGATTATGATGTTTCATTGAAACAAAATGAAATTATTTCTGTTCATGCCCCCACTGTTCTCTCTGAAACCTTGGGAGAGCATGCGGAAAGTCCGACTTTGACTGATGCTAGTGCTGGAGTCACAGATGGAGGCATTTTCACGAATGAGAACAGAGAAGACTTGGAGGACGTGAGATCTAATTTAACTGAAGAAACCCATAACAAATCAAAGTTTGGGAGTCTCTTTGAAATTTCTAAACCATCTCAGTGCCAGTTCTTGCAGCTCCCTGTTCATCCCAAAGTAAAAAAGATTGTCAGACTGACTTACACCAACGTGGGAAATGCCATTTTGGCATTAGCATCGAATGGTACTCATCTACTTTGGAAATGGCCACAGAATAACCAAAACTTGGATGGCCAGGCAACATCCCAAGTTTCCCCTCGCATATGGCAACCAATGAGTGGCTTGCGATTCATGTGCAATGACCTTGCAAGCATCAACCCTCAAGACCCAGTTGCCTGTTTTGCTTTATCAAAAAATGATTCATATCTCATGTCGACATCAGGGGGTATAATCTCCTTGTTCAACATGTTGACATTTAAGACTCTGACAACTATCATGCCTCCACCACCCAAGGCAACATCTCTTGCTTTCTATCCTCAGGATAATAATATACTTGCTGTAGGCATGGATGATTCCAGCATTCTTATATTTAACGTCCGTACAAACAAGGTTAGAAGCAAGCTTGCGGGCCACTCTAAAAGAGTTACTGCGCTTGCCTTCTCAAGCGCTTTAAACATTCTTGTTTCTGCTGATGTGAATAGTCAGATTTGTGTATGGACTACCGATGGGTGGGAAAAACGGAAAGAAAGGTACTTGCAGACGCATGGAGAGGAGACGCCAGAAGTACTATCTGATACTCACATTCAGTTTCACCGGGATCAGATTTGTTTCCTGGCTGTACAGGACAGTCATCTTGCAATTTATGAAGCAACGGAACTGAGATGTGTCAACCAGTGGAGTCCAGTACATTCTGTGGTTATCTCCCAGGCAACTTTCTCCTCTGATGGCCAGACCGTGTATGCCGGTTGTGTTGATGGGACTCTGGCAATATTTGATACTTCAAATCTTCAACTGCTTTGTAGGATTAACCCCGCCACTTACCTTTCCCCCGCTTCAAGTGTGAGCATCTACCCAGTTGCTATTGCTGCACATCCACAGAAACCAACCCAGTTTGCTGTGGGGCTCACGGATGGTAGTGTTTACGTGTTTGAGCCTAGGGAGCCAGGAGTTAACTGGAGCACATTCCCATTTGATGATAATGAGCCACCCAACACCAGGGTTCTGGGAGTCACTGGACTCGAGTCTGAGGTGAATTGA 3342 0.4177 MDQTWTPVVSDYDRPLVLSYVDEMAGAVYHLVCDTDYKSVGLKQTEKNLKRDILKNPNFSDETPSSVLSDIPMMLSRLQRESGFYFDMKYFEDTVLAGKWDDAESYLSSFTSIDDNRHSTKIYFELRKQKFLEALDINDRAKALDILIKDLKVFSQGHEELFKDMTQLLTINNIRDHESLSAYEDTNSVRKIVIQDIKKIIEANPLFNGKLKFPAIKCQRLRHLLNQSLNWQHLLCKDPLPDPVIQSLLVDHVCKPCLNISIAQSDDFSSVVRSCPPLSKSGDCCLSTVTDSALFHAANKNPETAVEVVGDPNKISKGRPCQALDEVTSAIANDLPRTVVQTLKDDSPPNSMDFHPIWHTVLLVGSHIGNIGLWDVTSSEKLLSRNFEVWNIGACSTSFKAALEKDLRVSVNRIMWSPDGSLFGVAFSKHIVQLYFYRGGNHICQHLEVEAHDGSVNDLAFSSLHQQLLVITCGDDKTIKVWDTKTGERCYTFDGHDAPVYSICPHMKEHVHFIFSTSIDGKIKAWLYDNMGARVDFDAPGCGYTKLAYSADDQRLFSCGTSKDGEPYLVEWDESEGYIKRLYEGLKVPCFSTINFDTTKNRLLAAGDDHMIKFWDMDNVKLGTSTDANGGLPAHPCIRFNKEGRLLAVAAKENEIKILATDYDVSLKQNEIISVHAPTVLSETLGEHAESPTLTDASAGVTDGGIFTNENREDLEDVRSNLTEETHNKSKFGSLFEISKPSQCQFLQLPVHPKVKKIVRLTYTNVGNAILALASNGTHLLWKWPQNNQNLDGQATSQVSPRIWQPMSGLRFMCNDLASINPQDPVACFALSKNDSYLMSTSGGIISLFNMLTFKTLTTIMPPPPKATSLAFYPQDNNILAVGMDDSSILIFNVRTNKVRSKLAGHSKRVTALAFSSALNILVSADVNSQICVWTTDGWEKRKERYLQTHGEETPEVLSDTHIQFHRDQICFLAVQDSHLAIYEATELRCVNQWSPVHSVVISQATFSSDGQTVYAGCVDGTLAIFDTSNLQLLCRINPATYLSPASSVSIYPVAIAAHPQKPTQFAVGLTDGSVYVFEPREPGVNWSTFPFDDNEPPNTRVLGVTGLESEVN 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0673 1113 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 84 142 IPR006595 -
Glsi10g0673 1113 Gene3D - 512 691 IPR015943 GO:0005515
Glsi10g0673 1113 Gene3D - 960 1100 IPR015943 GO:0005515
Glsi10g0673 1113 Gene3D - 299 503 IPR015943 GO:0005515
Glsi10g0673 1113 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 492 IPR001680 GO:0005515
Glsi10g0673 1113 ProSiteProfiles Trp-Asp (WD) repeats profile. 903 934 IPR001680 GO:0005515
Glsi10g0673 1113 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 514 1083 IPR011047 -
Glsi10g0673 1113 SMART WD40_4 853 893 IPR001680 GO:0005515
Glsi10g0673 1113 SMART WD40_4 442 483 IPR001680 GO:0005515
Glsi10g0673 1113 SMART WD40_4 486 527 IPR001680 GO:0005515
Glsi10g0673 1113 SMART WD40_4 336 375 IPR001680 GO:0005515
Glsi10g0673 1113 SMART WD40_4 575 616 IPR001680 GO:0005515
Glsi10g0673 1113 SMART WD40_4 396 436 IPR001680 GO:0005515
Glsi10g0673 1113 SMART WD40_4 813 850 IPR001680 GO:0005515
Glsi10g0673 1113 SMART WD40_4 987 1027 IPR001680 GO:0005515
Glsi10g0673 1113 SMART WD40_4 896 935 IPR001680 GO:0005515
Glsi10g0673 1113 SMART WD40_4 1045 1079 IPR001680 GO:0005515
Glsi10g0673 1113 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 449 488 - -
Glsi10g0673 1113 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 76 1096 IPR027728 GO:0006355
Glsi10g0673 1113 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 903 934 - -
Glsi10g0673 1113 SMART ctlh 84 142 IPR006595 -
Glsi10g0673 1113 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 625 IPR001680 GO:0005515
Glsi10g0673 1113 Gene3D - 707 957 IPR015943 GO:0005515
Glsi10g0673 1113 Pfam WD domain, G-beta repeat 902 934 IPR001680 GO:0005515
Glsi10g0673 1113 Pfam WD domain, G-beta repeat 449 483 IPR001680 GO:0005515
Glsi10g0673 1113 SUPERFAMILY Putative isomerase YbhE 338 584 - -
Glsi10g0673 1113 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0673 Glsi-ChrGlsi10 4259844 4267202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0673 430 660 Miscellaneous Gene Families AT5G08390 23.176 5.54e-07 52.0