Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0672 ATGGGGAAGCCGTCCGGTAAGAAGAGGAATCCTGTAACCCAGAAGGCTGCAAATGCAAACGACAAGCCTAGCAAGCCCCCCGAGCGGACTTCCAAAGCTTTTGACGAAGACACAGCAATGTTCATCAACATGTCACAAGATCTCAAGGAAGAAGGTAATAGACTCTTTCAAAAGAGGGACCACGAAGGTGCTATGTTGAAGTACGAGAAGGCCCTCAACCTCCTTCCCAGAAACCACATAGATGTTGCGCACCTACGAACCAATATGGCTGCGTGTTACATGCAACTGGGTCTTGGAGAGTATCCTCGAGCAATTAACGAATGTAATTTAGCACTAGAAGTATCGCCCAGATATAGTAAAGCTCTGTTAAAAAGAGCAAAGTGCTATGAAGCATTGAATCGATTCGATTTGGCATTGAGAGATGTTAATTATGTTTTGAGCGTGGAGTCTAATAATCTTAACGCATTGGAGATCCTGGAGAGTTTGAAAAAGACGATGGAGGAAAGAGGCATCACTATTGATGAGAAAGAGATTGGTTTGGCCAGTGTAGAGCAGCCTCCCTCTGCTTATTCGCGTAGAGTGATTAGAGAGAAAGTGAAGAAAAAGAAAAGTAAAAAAAGTGGGAAAAGGGTAGAGGATAAGGTGGTTGTTGAGGAGAATGTGAATGCTGTTAAAGATAAAGAAGTGGTTATAAAACCAATTAAGAAAGAAAAAGTGGTTGTGGAACCTGTTAAGGAAGAAAAAGTGGTCACAAGGATGGTCAAGTTGGTATTTGGAGAGGATATTAGGTGTGCGCAGTTGCCAGTGAATTGTAGTATGAGGTTGGTGAGGGATATAATTAGAGATCGGTTTCCAGGCTTGAAGGGAGTTCTTGTGAAGTATAGGGATCAAGAAGGTGATTTGGTTACTATCACTACTACTGATGAACTGAGGTTAGCCGAATCTTTAGGTCATGTGTTGGGTTCACTTCGACTCTATATTATGGAAGTCAATCTAGACCAAGAACCATCTTATGATGGAATAATCAATGAGGATGAGCTGCGAGGTGACATCTTTGAGCTTGGGGTTATGAAAGAAGGCAGAGATGGAGCAAATAGGATGATTACTGTGGAGGATTGGGTCATCCGGTTTGCAAGGCTGTTCAAGAACCATGTTGGGATTGATTCTGATTCATATTTGGATATTCATGAGCTGGGAATGAAGATATATTCAGAATCAATGGAGGATATGGTAACAAGTGATGATGCTCAAGAACTTTTTGAAATTGCTGCAGATAAATTTCAAGAGATGACAGCTTTAGCATTATTTAATTGGGGGAATGTTCACATGTCCAGGGCGAGGAAGCAGGTTTCCTATTCAGAGGATGGGTCAAGGGAATCTTCTTTTGAGCATATTAAAGCTGCATATGAGTGGGCACAGAAGGAGTACAAGAAAGCAGAAATGAGATATGAAGAGGCCTTGAAAATCAAACCAGACTTCTATGAAGGATTTCTGGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAAGCTCTGCTGGTATTATGCAATTGCTGGCAAGATGGATTTAGAAGCTGGCTCTTCCCATGAGGTTCTACAGCTCTACAACAAGGCAGAGGACAGCATGGAGAAGGGTATGTTGATGTGGGAGGAGATTGAGGAGCAGCGTTTAAATGGACTATCCAAATTAGATAAATATAAAGCACAATTAGAGAAAATGGGTTTACATAGTCTTTTCAAGGATATTTCTTCTGATGAAGCTGCAGAGCAAGCTGCAAACATGAGGTCACAAATATATCTTTTATGGGGTTCCTTGTTATATGAGCGTTCTGTTGTGGAATACAAGATAGGCTTACCAACATGGGAGGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTGGCTGGAGCTTCTCCAACAGATATAGGTGTCATGATAAAGAATCATTGTTCCAATCAAGCAGCACTAGAAGGTTTGGGGTTCAAAATTGATGAGATAGTACAGGCTTGGAATGAAATGTACGATGCCCAGAGGTGGCAGTTTGGTGTTCCATCATTTCGACTTGAACCCTTGTTTCGACGTCGTGTTCCTAAACTTCATTACATCTTGGAGCAATTTTAA 2118 0.4169 MGKPSGKKRNPVTQKAANANDKPSKPPERTSKAFDEDTAMFINMSQDLKEEGNRLFQKRDHEGAMLKYEKALNLLPRNHIDVAHLRTNMAACYMQLGLGEYPRAINECNLALEVSPRYSKALLKRAKCYEALNRFDLALRDVNYVLSVESNNLNALEILESLKKTMEERGITIDEKEIGLASVEQPPSAYSRRVIREKVKKKKSKKSGKRVEDKVVVEENVNAVKDKEVVIKPIKKEKVVVEPVKEEKVVTRMVKLVFGEDIRCAQLPVNCSMRLVRDIIRDRFPGLKGVLVKYRDQEGDLVTITTTDELRLAESLGHVLGSLRLYIMEVNLDQEPSYDGIINEDELRGDIFELGVMKEGRDGANRMITVEDWVIRFARLFKNHVGIDSDSYLDIHELGMKIYSESMEDMVTSDDAQELFEIAADKFQEMTALALFNWGNVHMSRARKQVSYSEDGSRESSFEHIKAAYEWAQKEYKKAEMRYEEALKIKPDFYEGFLALGHQQFEQAKLCWYYAIAGKMDLEAGSSHEVLQLYNKAEDSMEKGMLMWEEIEEQRLNGLSKLDKYKAQLEKMGLHSLFKDISSDEAAEQAANMRSQIYLLWGSLLYERSVVEYKIGLPTWEECLEVAVEKFELAGASPTDIGVMIKNHCSNQAALEGLGFKIDEIVQAWNEMYDAQRWQFGVPSFRLEPLFRRRVPKLHYILEQF 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0672 705 SMART tpr_5 460 493 IPR019734 GO:0005515
Glsi10g0672 705 SMART tpr_5 83 118 IPR019734 GO:0005515
Glsi10g0672 705 SMART tpr_5 45 78 IPR019734 GO:0005515
Glsi10g0672 705 SMART tpr_5 119 152 IPR019734 GO:0005515
Glsi10g0672 705 SUPERFAMILY CAD & PB1 domains 251 339 - -
Glsi10g0672 705 PANTHER PROTEIN CLMP1 1 703 IPR044517 -
Glsi10g0672 705 Gene3D - 238 329 - -
Glsi10g0672 705 MobiDBLite consensus disorder prediction 1 34 - -
Glsi10g0672 705 SUPERFAMILY TPR-like 36 166 IPR011990 GO:0005515
Glsi10g0672 705 Gene3D Tetratricopeptide repeat domain 401 545 IPR011990 GO:0005515
Glsi10g0672 705 Pfam PB1 domain 252 326 IPR000270 GO:0005515
Glsi10g0672 705 Coils Coil 469 489 - -
Glsi10g0672 705 SUPERFAMILY TPR-like 414 507 IPR011990 GO:0005515
Glsi10g0672 705 ProSiteProfiles PB1 domain profile. 251 330 IPR000270 GO:0005515
Glsi10g0672 705 SMART PB1_new 251 330 IPR000270 GO:0005515
Glsi10g0672 705 Gene3D Tetratricopeptide repeat domain 43 172 IPR011990 GO:0005515
Glsi10g0672 705 CDD PB1 254 327 - -
Glsi10g0672 705 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Glsi10g0672 705 SUPERFAMILY TPR-like 431 667 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0672 Glsi-ChrGlsi10 4253885 4256098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0672 28 168 Calmodulin-binding Proteins AT3G25230 27.333 2.64e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0672 10 4253885 4256098 Glsi08g1620 08 11536201 11538439 CCT