Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0666 ATGGCGTACCACAACCAACATCTCTCCCAAGGCCTCCCGCTTAACCATTTCACTGACCAATCTCATCAGCACCAACAACAGCAGAACCAGCCTCTTCCTGACAACTCCTTGCGTACCATATTGCCGGACCCCGGCGCTAAACCCGGCTCCGATCCCCGCCACCACCACCACCACCACCACCCCCTCCAAACCGCACCCAATTGGCTCAATAACGCTCTCCTTCGCACCCACTACACCGACAACAATAGCACCAACAACAATAACACCGCCGCTCCCAACAATAACAACGCCACCAATTTCCTCAACCTCCACACTGCCGCCTCTGACTCCCCTGGAGCTGCCTCCCAATCCTCCAACCAATGGCTGGCCCGCCCGATCCTCCACCGGAACCACAGTGACGTCATTGACGACGTCACCGCCGGGGACTCCATCATCGCCGGCGCTACCATGTCCCATGAATCCACCGATTTGAAGACAACCAGCGACAACCTCAATAACAAGAGTGAGGCCGTGGTTGTCGACAGCGGCGCCACCGGGGATGGCTTGGTGAACTGGCAGAATGCTAGGTACAAGGCGGAGATTCTTTCCCACCCGCTGTATGAACAGCTGCTATCGGCCCACGTGGCGTGCTTGCGGATCGCCACGCCGGTTGACCAGTTGCCGAGGATAGACGCTCAGCTGGCTCAGTCGGAGAATGTGGTGGGCAAGTACTCGGCGTTGGGACATGGGAGTCAGAGCATGGTTGGGGATGATAAGGAACTCGATCAGTTCATGTCGCACTATGTTTTGTTGCTCTGTTCATTCAAAGAACAACTCCAGCAGCATGTTCGGGTCCATGCGATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAGAGTCTAACAGGAGTCTCCCCAGGAGAAGGTACAGGAGCAACAATGTCCGATGATGAAGATGACCAAGTAGATAGTGATGCCAACTTGTTTGATGGTAGTTTGGATGGTTCAGACATGGGGTTCGGCCCCCTTATTCCGACGGAGAATGAGAGGTCACTCATGGAGCGTGTGAGGCAAGAATTAAAGCATGAACTGAAACAGGGTTATAAGGAGAAAATTGTGGACATAAGGGAGGAAATTTTGCGCAAGAGACGAGCAGGGAAACTTCCTGGTGACACAACCTCTGTCCTTAAATCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAAGATAAGGCAAGGTTGGTTCAAGAAACTGGCTTGCAATTGAAGCAGATTAATAATTGGTTCATCAATCAGAGGAAGAGAAACTGGCACAGCAATCCTTCAACCTCTACGGTTTTGAAGAGCAAGCGCAAAAGGTGA 1359 0.5254 MAYHNQHLSQGLPLNHFTDQSHQHQQQQNQPLPDNSLRTILPDPGAKPGSDPRHHHHHHHPLQTAPNWLNNALLRTHYTDNNSTNNNNTAAPNNNNATNFLNLHTAASDSPGAASQSSNQWLARPILHRNHSDVIDDVTAGDSIIAGATMSHESTDLKTTSDNLNNKSEAVVVDSGATGDGLVNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSENVVGKYSALGHGSQSMVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGSDMGFGPLIPTENERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0666 452 CDD homeodomain 378 439 IPR001356 GO:0003677
Glsi10g0666 452 FunFam homeobox protein knotted-1-like 3 isoform X1 376 437 - -
Glsi10g0666 452 Pfam ELK domain 355 376 IPR005539 GO:0003677
Glsi10g0666 452 SMART KNOX2_2 244 299 IPR005541 GO:0003677|GO:0005634
Glsi10g0666 452 MobiDBLite consensus disorder prediction 1 64 - -
Glsi10g0666 452 Gene3D - 374 446 - -
Glsi10g0666 452 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677
Glsi10g0666 452 SMART ELK_2 355 376 IPR005539 GO:0003677
Glsi10g0666 452 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677|GO:0006355
Glsi10g0666 452 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 33 437 - -
Glsi10g0666 452 ProSiteProfiles ELK domain profile. 355 375 IPR005539 GO:0003677
Glsi10g0666 452 SMART KNOX1_2 188 232 IPR005540 GO:0003677|GO:0005634
Glsi10g0666 452 SMART HOX_1 377 442 IPR001356 GO:0003677
Glsi10g0666 452 MobiDBLite consensus disorder prediction 1 36 - -
Glsi10g0666 452 Pfam KNOX2 domain 248 298 IPR005541 GO:0003677|GO:0005634
Glsi10g0666 452 Pfam KNOX1 domain 190 231 IPR005540 GO:0003677|GO:0005634
Glsi10g0666 452 MobiDBLite consensus disorder prediction 298 317 - -
Glsi10g0666 452 SUPERFAMILY Homeodomain-like 377 440 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0666 Glsi-ChrGlsi10 4209476 4212749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0666 1 452 Homeobox Transcription Factor Family AT5G25220 66.596 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Glsi10g0666 KNOX2 1.3e-21 No_clan