LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g0661	ATGGAGTTGATGGAAATTGAGGAACCGTTATCGGAGGGCGTTGAAGGTGAACAGGACACAGAAGAAGCAATGAAAATGAAGCTTCTTCCTATGCTTCCTGTGCTGCTTCTTTGTCTTCACGAACCCATTTGGGTTTATACCGCAGCAGACCCTCTTGTTTCCTCCATCCCAGTTCCCATTTCCTCATCTCGAGTCCCACTCCCAACCATTTCTCCAATTTCTGCTTCAATGGCTGCTTTCTCCCCAGGTGTTCAGGTGGAGAATGAAGAGCACCAAATGGATTCACACAAGAAAATTGTAATAGCGCTCGCCGTAGCAAGTACGGCACTGGCTGCAGTCATTTTGTCCTTGTTGTGCTTCTGGATTTATAATAGGAAGTATCCGTCCAAATCCAATAGGAAAAACGTTCCAAGCTCAGATGCAGAGAAAGGGCTCGCGCTAGCTCCATTTTTGAGTAAATTCAGTTCTATCAAGATAGTTGGTAGAAAAGGGTCTCTTCCAATAATTGATTATAAGCAAATAGAAAAAGCAACAAACAATTTCCGGGAAAGTAACATCTTGGGCCAGGGCGGATTTGGATGTGTTTACAAGGCTCGATTGGATGATAACCTGGATGTTGCCGTCAAGAAACTGCACTGTGAAAGTCAGAATGCTGAAAGAGAATTCGAGAACGAGGTGGATTTGTTAAGTGAAATTCAGCATCCAAATATAATTTCTTTACTGGGTTGTAGCATTAATGACGACACGAGGTTTATTGTCTACGAGTTGATGCAAAATGGATCCCTGGAAACTCAATTACATGGACCTTCTCACGGTTCGGCATTGACTTGGCATATGAGGATGAAGATTGCTCTTGATACAGCAAGAGGATTAGAATATCTGCATGAGCACTGTAAGCCTCCGGTGATCCATAGAGATCTGAAATCATCTAATATTCTTTTAGATGAAAACTTCAATGCCAAGCTTTCTGATTTTGGTCTTGCCATAATCGATGGGTCCCAAAGCAAGAATAACATCAAGCTTTCAGGCACCTTGGGGTACGTAGCCCCGGAGTATCTTCTAGATGGTAAATTGACTGATAAAAGTGATGTGTATGCTTTTGGAGTTGTCCTTCTTGAGCTTCTATTAGGAAGGAAGCCAGTGGAAAAACTGGCACCAGCTCAATGCCAATCCATTGTCACATGGGCCATGCCACAGCTCACTGACAGATCCAAGCTTCCAAACATTGTGGATCCTGCGATTAAGAATTCAATGGATGTGAAGCATTTATACCAGGTTGCTGCTGTCGCTGTGCTATGCGTGCAACCAGAACCAAGTTACCGTCCACTGATTACGGACGTTCTTCACTCGCTAATCCCTCTTGTTCCAATTGAGCTTGGAGGAACGCTGAGAATTTCACAAGTGACACACACGGTGTCTTAG	1422	0.4374	MELMEIEEPLSEGVEGEQDTEEAMKMKLLPMLPVLLLCLHEPIWVYTAADPLVSSIPVPISSSRVPLPTISPISASMAAFSPGVQVENEEHQMDSHKKIVIALAVASTALAAVILSLLCFWIYNRKYPSKSNRKNVPSSDAEKGLALAPFLSKFSSIKIVGRKGSLPIIDYKQIEKATNNFRESNILGQGGFGCVYKARLDDNLDVAVKKLHCESQNAEREFENEVDLLSEIQHPNIISLLGCSINDDTRFIVYELMQNGSLETQLHGPSHGSALTWHMRMKIALDTARGLEYLHEHCKPPVIHRDLKSSNILLDENFNAKLSDFGLAIIDGSQSKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPQLTDRSKLPNIVDPAIKNSMDVKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRISQVTHTVS	473

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g0661	473	FunFam	Protein kinase superfamily protein	148	256	-	-
	Glsi10g0661	473	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	302	314	IPR008271	GO:0004672\|GO:0006468
	Glsi10g0661	473	Gene3D	Transferase(Phosphotransferase) domain 1	257	456	-	-
	Glsi10g0661	473	SMART	serkin_6	181	452	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g0661	473	Gene3D	Phosphorylase Kinase; domain 1	150	256	-	-
	Glsi10g0661	473	ProSitePatterns	Protein kinases ATP-binding region signature.	187	210	IPR017441	GO:0005524
	Glsi10g0661	473	ProSiteProfiles	Protein kinase domain profile.	181	452	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g0661	473	FunFam	probable receptor-like protein kinase At1g80640	257	456	-	-
	Glsi10g0661	473	PANTHER	OS01G0750732 PROTEIN	55	454	-	-
	Glsi10g0661	473	SUPERFAMILY	Protein kinase-like (PK-like)	160	451	IPR011009	-
	Glsi10g0661	473	Pfam	Protein kinase domain	182	449	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g0661	473	CDD	STKc_IRAK	187	454	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g0661	Glsi-ChrGlsi10	4168896	4173858	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g0661	42	397	Receptor kinase-like Gene Family	AT1G80640	49.315	1.68e-106	319

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-X	Glsi10g0661		Pkinase	6e-50	CL0016