LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g0658	ATGGCAAGACCACAACAGAAATACCGAGGTGTCCGACAAAGGAAGCGGGGCCATTGGGTCTCTGAAATTCGCCGACCTCAATTAAAGACTAGGATTTGGCTTGGTACTTTCGAAACGGCAGAAGATGCAGCTAGGGCGTACGATGAAGCAGCAAGGCTAATGTATGGTCCGAGGGCAAGAACCAACTTCCCTTACAATCCCAGTGTGTCTCAGGCATCTTCCAAGCTTCTCTCTGCAACTTTGACTGCAAAACTGCCTAGGTGCTATATGGCTTCGCCGCCAATGACTACACCCTCATTGCCGGAGCCTCAGAGATCAGTAGCTTCACCAAATGTTGTCTCTACAAGCAACTTTGCTGGAAAAAGCAGTGAAACTGAGACAACGTTGGCACACAAGACGCCCCAGGAGGAGCAAGAATCAGAGGTGAACTGA	432	0.4977	MARPQQKYRGVRQRKRGHWVSEIRRPQLKTRIWLGTFETAEDAARAYDEAARLMYGPRARTNFPYNPSVSQASSKLLSATLTAKLPRCYMASPPMTTPSLPEPQRSVASPNVVSTSNFAGKSSETETTLAHKTPQEEQESEVN	143

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g0658	143	Gene3D	AP2/ERF domain	6	65	IPR036955	GO:0003700\|GO:0006355
	Glsi10g0658	143	FunFam	Ethylene-responsive transcription factor 2	6	65	-	-
	Glsi10g0658	143	SMART	rav1_2	7	70	IPR001471	GO:0003700\|GO:0006355
	Glsi10g0658	143	ProSiteProfiles	AP2/ERF domain profile.	7	64	IPR001471	GO:0003700\|GO:0006355
	Glsi10g0658	143	Pfam	AP2 domain	7	56	IPR001471	GO:0003700\|GO:0006355
	Glsi10g0658	143	CDD	AP2	6	66	IPR001471	GO:0003700\|GO:0006355
	Glsi10g0658	143	PRINTS	Ethylene responsive element binding protein signature	8	19	IPR001471	GO:0003700\|GO:0006355
	Glsi10g0658	143	PRINTS	Ethylene responsive element binding protein signature	30	46	IPR001471	GO:0003700\|GO:0006355
	Glsi10g0658	143	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	6	138	-	-
	Glsi10g0658	143	MobiDBLite	consensus disorder prediction	93	143	-	-
	Glsi10g0658	143	SUPERFAMILY	DNA-binding domain	7	66	IPR016177	GO:0003677
	Glsi10g0658	143	MobiDBLite	consensus disorder prediction	101	129	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g0658	Glsi-ChrGlsi10	4159771	4160288	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g0658	1	92	AP2-EREBP Transcription Factor Family	AT5G25190	82.796	1.62e-51	160

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi10g0658		AP2	5.8e-13	CL0081