Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0655 ATGTCTCTGAAAAAATCCAACTACAAAAACCCACCTCTCCTCCTCCTTCAGTTGGTACCACACAATTTCTCTATTCTTGCAGTCCCCCCATCAAAGCTCAAGCATTTTCACAAACATCTTTTCCCTAACATGGCAAGACCACAACAGAGATACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCATCCTCTATTGAAGACTAGGATTTGGCTTGGTACTTTCGAAACGGCAGAAGATGCAGCTAGAGCGTACGATGAAGCAGCAAGGCTAATGTGTGGTCCGAGGGCAAGAACCAACTTCCCTTACAACCCCAATGCGTCACAGTCATCTTCCAAGCTTCTCTCTGCAACTTTGACTGCAAAACTGCATAGGTGCTATGTGGCTTCGCTGCAAATGACTAGACCCTCGTTACCGGAGCCTCAGAGATTAGTAGCTTCACCAAATGTTGTCTCCACAAGCAACTTGGCTGGGAAAAGCAGCGAAACTGAGACAATGTTGGCACACAAGAGTCCCCAGGAGGAGAAAGAATCAGAGGCGAACTGGGTTGTGAAGAAGGTTAAGGTGGAAAGTGCTCAGCAGTTCAAACCTCTTGAAGAAGATCACATTGAGCAAATGATAGAGGAACTGCTTCATTACGGTTCTATTGAGCTCTGCTCCGTCATACCACCTCAGCCTCTGTGA 699 0.4735 MSLKKSNYKNPPLLLLQLVPHNFSILAVPPSKLKHFHKHLFPNMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASQSSSKLLSATLTAKLHRCYVASLQMTRPSLPEPQRLVASPNVVSTSNLAGKSSETETMLAHKSPQEEKESEANWVVKKVKVESAQQFKPLEEDHIEQMIEELLHYGSIELCSVIPPQPL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0655 232 MobiDBLite consensus disorder prediction 158 172 - -
Glsi10g0655 232 CDD AP2 49 109 IPR001471 GO:0003700|GO:0006355
Glsi10g0655 232 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Glsi10g0655 232 SUPERFAMILY DNA-binding domain 50 109 IPR016177 GO:0003677
Glsi10g0655 232 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Glsi10g0655 232 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 48 182 - -
Glsi10g0655 232 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Glsi10g0655 232 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Glsi10g0655 232 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Glsi10g0655 232 MobiDBLite consensus disorder prediction 158 182 - -
Glsi10g0655 232 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Glsi10g0655 232 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0655 Glsi-ChrGlsi10 4148102 4148889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0655 44 232 AP2-EREBP Transcription Factor Family AT5G25190 66.842 2.27e-82 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi10g0655 AP2 1.1e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0655 10 4148102 4148889 Glsi08g1636 08 11623600 11624585 CCT