Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0652 ATGGAGCCATACCTTTGTGATAATTTCAGCATCCGAGAGGCTCCTCCAAGTCCAAGCACACCATTGCAGAATCCGCAGGAAAAGCAACACAAATCTGTCGAAGAAGAGGAAGAGGACAAATACCAAGAAAAGGAGGTGCAAATAGATACTTTATTTGACCTGAATGGCTCTGGCCATGATTCTGGTGACAGGTGCAATCCGGAACTAAATCTCATCAACCGTTTGGATGTGGATTCAATTTCATCTAAAACTTCATCGGATCAGAAATATCCTCGATTTTTCTCTTGCAACTACTGTCAGAGAAAGTTCTACAGTTCGCAAGCGCTTGGGGGGCACCAAAATGCCCATAAGAGGGAGAGGTCAATGGCTAAAAGAGGACAGAGGTTAATGGGCTCAGCAGCAGCTTATGGGCTACCTTTTCTGCAAAATCACCGGTATACGAGTATGTCACCTCTACCCCTCCATGGTGCCTGTAATAAAACTCTTGGAATTCAGGCGCACTCTTTGATCCACAAGCCTTCTCATATTTATTCGAGACCCCTTATTGATCAGCAGCCTGGAATAGGGAAGCTGGACATGGCAAATTTCCACAGAACAACATCAGGATTATGTTCGCGGGGCAGTGTGGGTAGGTTTGAAATTGTAAAGACGATGACGGGTTCTGCAGAAAGTGGAACTCTTTTGAAGACTAATCAAGAAGAAATGAAGCAGCTTGATTTGTCCCTCAAGCTCTAG 735 0.4476 MEPYLCDNFSIREAPPSPSTPLQNPQEKQHKSVEEEEEDKYQEKEVQIDTLFDLNGSGHDSGDRCNPELNLINRLDVDSISSKTSSDQKYPRFFSCNYCQRKFYSSQALGGHQNAHKRERSMAKRGQRLMGSAAAYGLPFLQNHRYTSMSPLPLHGACNKTLGIQAHSLIHKPSHIYSRPLIDQQPGIGKLDMANFHRTTSGLCSRGSVGRFEIVKTMTGSAESGTLLKTNQEEMKQLDLSLKL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0652 244 MobiDBLite consensus disorder prediction 13 27 - -
Glsi10g0652 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Glsi10g0652 244 FunFam Zinc finger protein 2 73 139 - -
Glsi10g0652 244 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Glsi10g0652 244 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Glsi10g0652 244 MobiDBLite consensus disorder prediction 28 44 - -
Glsi10g0652 244 MobiDBLite consensus disorder prediction 1 44 - -
Glsi10g0652 244 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 8 244 IPR044246 GO:0009788
Glsi10g0652 244 Gene3D Classic Zinc Finger 74 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0652 Glsi-ChrGlsi10 4131885 4132619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0652 32 244 C2H2 Transcription Factor Family AT5G10970 43.443 2.32e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi10g0652 None None None