Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0651 ATGACCGTGGAGACTAGAATGGATGATCCCAGAGATCAGTTTCCTGTAGGAATGCGTGTTCTTGCCGTTGACGATGACCCAACCTGCCTCTTGGTGCTGGAAACTCTGCTTCGGAGATGCCAATATCACGGTTTGCTTCTCGCGATAACAGCATTGACGTTGTTGAGAGAAAACAAAAACAAGTTTGACCTGGTTATTAGCGATGTTCATATGCCAGACATGGATGGATTTAAGCTGCTGGAGCTCGTGGGACTTGAAATGGACCTACCTGTCATAATGTTGTCTGCAAATGGTGACACAAAGCTGGTGATGAAGGGAATTGCTCATGGTGCTTGTGATTATCTGCTGAAACCTGTTCGAATTGAGGAGCTACAGAACATTTGGCAACATGTAATCAGGAGAAAGAAGTTAGACTCAAAGGAGCGGAACAACACCTGCAACCAAGACAAGCCTCATTCTGGTAGCTGCAACGGACTAGGGTCAGCAGGTGCAGGAAATTCGGATCAGAATGGAAAGCTGACCAAAAAAAGGAAGGATCAGGATGATGAAGAAGACGAGGAGCATGATAATGTTCATGACAATGAGGACCCATCAACCCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTTCACCGGAAGTTCGTTGCTGCTGTTAATCAATTAGGCATTGACAATGCTAGTGTTTTTTTGGTGGCAGAAGCTGTACCTAAAAAAATCCTTGATTTGATGAATGTTGAAAAGCTTACGAGGGAGAATGTGGCAAGCCATCTCCAGAAATATAGGCTCTATCTGAAGAGAATCAGCTGTGTGGCAAACCAGCAGGCTAATATGGTGGCAGCTTTAGGGAGTGCAGATCCATCCTATTTGAGAATGAGCTCTCTGAGTGGACTTAAACATCTGCAACCATTGAGTGGTTCTGGACAGTTTCAGAACAATGCTTTTCGGCCCCTCCCATATAGTGGGATGATTGGTAGATTGAACACTCCTGCTGGTCTCGGTGGTCATGGGTTGCCTTCACCAGGAATTCTTCAGTTGGGTCATGCACAAAATTTAAACAACTCCATGACTGATCCCACTAACTTCCAGTCAGCCATAGCTCAGGGAATACCGGTGCCTGTAGGGCTCGATCAATTACAACCCAATAAGGTCGTTAATTCTGTTCAAGTTCCCACCACTGGATTTGATGATAAAGCTATCTCGCCCATCTCAAATAAACTACCAAGACCAATAGTAACCTCCTGTGGCTCACGCAATCCTCTTCTGGGTGTCACAAACAACCCCTTGATGTTAGAACCAAATTCTCAGGACACACAAGGGCACGGGGGCAGAGGACATTCGGAATTTTCCCATTCTTTGCTGGATCATGGTAGGTGCAGTAGTGATAATTGGCCAAGTGCTGTGCAATCATCTGGGATCCACACAAATTCTTACTCAGCAAATGCAAGTGAATGTTTTCGACCGGCTGCTATACCTTGTGCAGATAACTTGCATGCGGGGAATCCAAGTGGTGCTTCATCCATCACTTCATTGTCCAGTCAATCCCATGAATCAATGGCAGATATCTTTAATAATACAGCTGGGAAAATAAGCAGTAATGTGGCATATCAAGGGTGGGATGACCAGAATCAGGATGCTACTTACCATTCATTAGAGACTCTGATTCCTGTAAATGGTGCTGTGGGTCCATCAGCCCATGTTCCTACAAACTCATCCTTCCATAGAAACTTAGACTTTAATTTCGAAAATCCCTTAGAAATGAACCATGAAGGGGTCACAAAATCAACTCAAGATACCTCAATGAAACCAAATCCGGGGTACATGATGGGCCTGCAGAAGGCACAACGGAGTCGCATTTCTAATAATCTTGGTTCACTGGAAGACTTAGTCAGTGCAATGATGAAACAGGAGCAAGATAAGGTGAAATTGGTGGACGGAGACTTCATTTGTGATGATTACACGGGTGGACATGCTTGA 1977 0.4497 MTVETRMDDPRDQFPVGMRVLAVDDDPTCLLVLETLLRRCQYHGLLLAITALTLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGIAHGACDYLLKPVRIEELQNIWQHVIRRKKLDSKERNNTCNQDKPHSGSCNGLGSAGAGNSDQNGKLTKKRKDQDDEEDEEHDNVHDNEDPSTQKKPRVVWSVELHRKFVAAVNQLGIDNASVFLVAEAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSADPSYLRMSSLSGLKHLQPLSGSGQFQNNAFRPLPYSGMIGRLNTPAGLGGHGLPSPGILQLGHAQNLNNSMTDPTNFQSAIAQGIPVPVGLDQLQPNKVVNSVQVPTTGFDDKAISPISNKLPRPIVTSCGSRNPLLGVTNNPLMLEPNSQDTQGHGGRGHSEFSHSLLDHGRCSSDNWPSAVQSSGIHTNSYSANASECFRPAAIPCADNLHAGNPSGASSITSLSSQSHESMADIFNNTAGKISSNVAYQGWDDQNQDATYHSLETLIPVNGAVGPSAHVPTNSSFHRNLDFNFENPLEMNHEGVTKSTQDTSMKPNPGYMMGLQKAQRSRISNNLGSLEDLVSAMMKQEQDKVKLVDGDFICDDYTGGHA 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0651 658 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 275 IPR045279 GO:0009736
Glsi10g0651 658 MobiDBLite consensus disorder prediction 141 201 - -
Glsi10g0651 658 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Glsi10g0651 658 PIRSF RR_ARR_type-B 1 657 IPR017053 GO:0003677|GO:0003700|GO:0009736
Glsi10g0651 658 MobiDBLite consensus disorder prediction 427 445 - -
Glsi10g0651 658 SUPERFAMILY CheY-like 17 140 IPR011006 -
Glsi10g0651 658 Gene3D - 17 153 - -
Glsi10g0651 658 CDD REC_typeB_ARR-like 20 132 - -
Glsi10g0651 658 SMART REC_2 18 128 IPR001789 GO:0000160
Glsi10g0651 658 FunFam Two-component response regulator 198 269 - -
Glsi10g0651 658 Gene3D - 198 269 - -
Glsi10g0651 658 MobiDBLite consensus disorder prediction 148 170 - -
Glsi10g0651 658 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Glsi10g0651 658 Pfam Myb-like DNA-binding domain 204 262 IPR001005 -
Glsi10g0651 658 MobiDBLite consensus disorder prediction 427 454 - -
Glsi10g0651 658 NCBIfam myb-like DNA-binding domain, SHAQKYF class 202 263 IPR006447 GO:0003677
Glsi10g0651 658 SUPERFAMILY Homeodomain-like 199 267 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0651 Glsi-ChrGlsi10 4122283 4125539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0651 1 648 Response Regulator Gene Family AT2G25180 43.824 5.10e-130 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Glsi10g0651 Response_reg 3.8e-19 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0651 10 4122283 4125539 Glsi08g1642 08 11651528 11655236 CCT