Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0650 ATGGGGCAACCTTATTCTGGTGGTGCTATGGTGCCCACCTTGTGTGTGGTGTCTGCTGCAAATTTGATTGATTTATTGAAGAACATGAGTAGCCTGGTTGAGAGGCTTCGTGTAAGATCAGATCGCAAGCCAGTTTATAATATAGATGACTCAGATGATGATGCTGATTTTTTGCATGGAAGACCTGCGAGAACTCAGGAAAAGTTTGAGAGGATAGTCAGAAGTGACACAAAAGAGAATTCATGCCAAGCCTGTGGAGAAAGTGGAAATCTTCTTAGCTGTGAAACATGTACTTATGCCTACCATCCTAAGTGTTTACTTCCACCACTTAAAGCTCCCCTTCCAGATAACTGGAGGTGCCCTGAATGTGTTAGCCCATTGAATGATATTGATAAAATATTAGATTGCGAGATGCGCCCTACTGTAGCAGGTGACGGCGATCCCACAAAACTGGGTTCAGAGCAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGATTATCATATCTGCACTGCACATGGGTGCCAGAGAAAGAGTTTCTGAAAGCTTTCAAATCACATCCTCGTCTGAAGACCAAAGTAAACAACTTCCATCGTCAAATGGCATCTGTCAATACCTCTGAGGATGACTTTGTTGCCATTCGACCTGAATGGACCATGGTTGATCGTATACTTGCTTGCAGGGGTGATGATGATGAAAAGGAATATCTTGTGAAGTGGAAAGAGCTTTCATATGACGAATGTTATTGGGAGTTTGGGTCTGATATTTCTTCATTTCAGCCAGAAATTGAAAGATTCACTAAATTTCAGTCTAGGTCTAGAAAAATTTCTTCTAGTAAGCAGAAGAGCAGTGTTAAGGTTGGTGCTGAAAAAGGGAAGCATCAGAAAGAATTTCAACAGTATGAACATAGCCCTGACTTTCTTTCAGGTGGCACTCTACATCCATATCAGCTTGAAGGCTTGAACTTTTTGCGTTTCTCTTGGTCTAAGCAAAATCATGTTATTCTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTTTTTAGCATCCCTCTTTAAAGAGAATGTTTCTCCACATCTTGTGGTTGCTCCACTGTCAACTCTTCGAAACTGGGAACGTGAATTTGCAACATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGATCTGCCCAAGCTCGTGCTGTTATAAGACAGTATGAATTTTACTTTCCAAAGAACCAGAAGAAAATCAAGAAAAAGAAATCTGGTCAAATAGTTAGTGAAAGCAAGCAAGACAGGATCAAATTTGACGTCCTTTTGACATCATATGAGATGATCAACTTTGACACAGCATCATTGAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTGTAGCAGACATCGTGTACTTTTGACCGGGACTCCTCTTCAGAACAACCTGGATGAACTTTTTATGCTAATGCACTTCCTTGATGCTGGGAAGTTTGGAAGCTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCAGGAGGAACAGGTTTCAAGGCTTCACAAAATGTTGGCTCCACACCTCCTTAGAAGAGTGAAGAAAGATGTGATGAAGGAACTACCTCCTAAAAAGGAACTTATTTTACGAGTCGAATTAAGCATCAAACAGAAAGAATATTACAAGGCAATTTTGACCCGTAATTATCAAATATTAACTCGTCGTGGTGGTGCTCAGATTTCTCTTATCAATGTTGTTATGGAGTTGCGCAAACTTTGTTGTCATCCTTACATGTTAGAAGGAGTTGAACCAGATATTGAAGATGCAAAAGAATCAAACAAACAGCTAGTGGAATCATCGGGGAAGTTGCAGTTGCTGGACAAGATGATGGTGAAGCTTAGAGAGCAAGGACACAGAGTCCTCATATATTCACAATTTCAGCACATGTTGGACTTGCTAGAAGACTACTGTTCTTACAAGAATTGGCAGTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAATAAGGATAGATCGTTTTAATGCCAAAAATTCTTCGAGATTTTGTTTTCTTCTTTCTACTAGAGCCGGGGGATTGGGGATAAACCTTGCAACTGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACAAATAAGGTGTTGATTTATAGGCTCATAACACGAGGAACCATTGAAGAAAGGATGATGCAAATGACCAAGAAGAAAATGGTGTTAGAACATCTAGTTGTTGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGATATCATTAGGTATGGCTCGAAGGAGTTATTTGCTGATGAGAATGATGAAGCAGGAAAATCCCGCCAAATTCATTATGATGAGGCTGCCATAGATAGACTGCTGGATCGTGAGCAATTTGGAGATGAAGAAGCTATGTTGGATGATGAAGATGAAGATGGATTTCTGAAGGCCTTTAAGGTGGCAAATTTTGAATATATTGATGAAGTTGAGGCTGCAGCGGAGGAGGAGGCACAAAAGAGAGCAGTGGAGAATAAATCTACTGTGAACAGTTCAGAAAGAACAAATTACTGGGAGGAGTTGTTAAAAGACAGATATGAAGTGCATAAAAGTGAAGAGTTTAGTACCTTGGGTAAAGGAAAGCGAAACCGCAAGCTGATGGTTTCTGTTGAGGAGGATGATCTTGCTGGCCTGCAAGATGTAAGCTCTGATGGTGAAGACGACAATTATGAAGCAGAGGTTGTGGATGGTGATTCAAATTCAACTGGAACTACTTTCAGTAGAAGGCCTTACAAAAAGAAAGCCCGTGCAGCAGATAGCACAGAGCCACTTCCTTTGATGGAAGGTGAAGGGAAATCATTCAGAGTACTTGGTTTTAATCAAAGTCAGAGGGCTGCATTTGTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTTCTTCTCGCCTGAAACAGAAGACATATGAAGAAATTAAAGATTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCACCTACATTTTCAGATGGTGTTCCAAAAGAAGGGCTTAGAATACAAGATGTACTTGTTAGGATTGCAGTTCTGCTCTTGGTAAGAGACAAGGTGAAGTTTGCATCAGAAAATCCTGGAACTCCACTTTTCTCAGATGACATCTTATTAAGATACCCAGGGTTGAAGGGAGGAAAGATGTGGAAGGAGGAACATGATTTAGTGTTACTGCATGCCTTGTTGAAGCATGGTTATGGACGGTGGCAAGCAATTGTTGATGATAAGGATCTGAAGATTCAGGAGGTCATTTGTCAAGAGTTGAATCTTCCCATTATAAATTTACCAGTACTAGGACAAGTTGGTAGCCAGGTGCAAAATGGTGCAAATTCAACGAATGTAGAAGCACCCAGCAACCAATCTAGGGAAAATGGTGGGAGTGACAGGGCAGCTGACGGTGCACTTGGTTCTGGTGATGCTAGGAACCAAGCACAGTTATATCAAGAGTCTTCCTCTTCGGTATTGTATCACTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTGCTTCTGTTGGAAAAGGGGCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGACCAGAAAGCAAATGAAATGATGAATGTAGAATTTAAAAGTGAACCAAAGGCTACAAATGTGCCTAGTTATAAATCCGAGGAGACTGACAAGCAAATGATTGATCAACTGCCTCAAATAGAAGCGATAGCTTCAGAAGAAATTTCTGTTGCCGGTTGTGATAATGATACAAATCGATTGGAATTGGTTCGGCTTTACAATGAGATGTGCAGGGTTGTGGAGGAAAACACTGTGGAATTGGTTCAAACATTTTATGCTAGAGAACCAGCAGAAGTCAGCTCGATGAAGAACTTCCTTCCCCTAGAAAATATCTGTGAAGACATCAATAGAATTTTATCACCCACAAAACAAAGGCATCCCACTGCGGTAATGGCAACATTGAATCCGGATAACAAATCAGAGGCTTTATCAGAGGGTGAAGTTTTGGACTCCAGATTGCCGTCTGTCTCTCAAGATGACCGCAAACCTGATAATGTGGTAGACGATGGGAGCAAAGATGCGGGGATAGAGTCTGAGCTAAAAAAAGAAAGCGGACCAGGGACGCGGGGAAGTGATATAGAAATGGGCGAAACTGGGAATGATGCTGTGTTGGATGAAAACACGCATAAATCTGACCCAGGCGTCGTTGTTTTGGATGATTAA 4404 0.4069 MGQPYSGGAMVPTLCVVSAANLIDLLKNMSSLVERLRVRSDRKPVYNIDDSDDDADFLHGRPARTQEKFERIVRSDTKENSCQACGESGNLLSCETCTYAYHPKCLLPPLKAPLPDNWRCPECVSPLNDIDKILDCEMRPTVAGDGDPTKLGSEQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSHPRLKTKVNNFHRQMASVNTSEDDFVAIRPEWTMVDRILACRGDDDEKEYLVKWKELSYDECYWEFGSDISSFQPEIERFTKFQSRSRKISSSKQKSSVKVGAEKGKHQKEFQQYEHSPDFLSGGTLHPYQLEGLNFLRFSWSKQNHVILADEMGLGKTIQSIAFLASLFKENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARAVIRQYEFYFPKNQKKIKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYCSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQVSRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSIKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDAKESNKQLVESSGKLQLLDKMMVKLREQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDEAAIDRLLDREQFGDEEAMLDDEDEDGFLKAFKVANFEYIDEVEAAAEEEAQKRAVENKSTVNSSERTNYWEELLKDRYEVHKSEEFSTLGKGKRNRKLMVSVEEDDLAGLQDVSSDGEDDNYEAEVVDGDSNSTGTTFSRRPYKKKARAADSTEPLPLMEGEGKSFRVLGFNQSQRAAFVQILMRFGVGDFDWKEFSSRLKQKTYEEIKDYGTLFLSHIAEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLVRDKVKFASENPGTPLFSDDILLRYPGLKGGKMWKEEHDLVLLHALLKHGYGRWQAIVDDKDLKIQEVICQELNLPIINLPVLGQVGSQVQNGANSTNVEAPSNQSRENGGSDRAADGALGSGDARNQAQLYQESSSSVLYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDQKANEMMNVEFKSEPKATNVPSYKSEETDKQMIDQLPQIEAIASEEISVAGCDNDTNRLELVRLYNEMCRVVEENTVELVQTFYAREPAEVSSMKNFLPLENICEDINRILSPTKQRHPTAVMATLNPDNKSEALSEGEVLDSRLPSVSQDDRKPDNVVDDGSKDAGIESELKKESGPGTRGSDIEMGETGNDAVLDENTHKSDPGVVVLDD 1467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0650 1467 MobiDBLite consensus disorder prediction 1450 1467 - -
Glsi10g0650 1467 MobiDBLite consensus disorder prediction 1172 1201 - -
Glsi10g0650 1467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 549 805 IPR027417 -
Glsi10g0650 1467 Pfam CHD subfamily II, DUF1087 872 933 IPR009463 -
Glsi10g0650 1467 Gene3D - 209 269 - -
Glsi10g0650 1467 ProSitePatterns Zinc finger PHD-type signature. 82 123 IPR019786 -
Glsi10g0650 1467 Gene3D - 557 781 IPR027417 -
Glsi10g0650 1467 MobiDBLite consensus disorder prediction 1381 1467 - -
Glsi10g0650 1467 Pfam Helicase conserved C-terminal domain 637 750 IPR001650 -
Glsi10g0650 1467 Pfam CHD subfamily II, SANT-like domain 966 1098 IPR009462 GO:0003677|GO:0006338
Glsi10g0650 1467 Gene3D - 306 556 IPR038718 -
Glsi10g0650 1467 ProSiteProfiles Chromo and chromo shadow domain profile. 220 282 IPR000953 -
Glsi10g0650 1467 SMART ultradead3 310 523 IPR014001 -
Glsi10g0650 1467 ProSiteProfiles Zinc finger PHD-type profile. 79 126 IPR019787 -
Glsi10g0650 1467 CDD SF2_C_SNF 635 761 - -
Glsi10g0650 1467 SMART DUF1087_2 871 936 IPR009463 -
Glsi10g0650 1467 SMART PHD_3 81 124 IPR001965 -
Glsi10g0650 1467 ProSiteProfiles Chromo and chromo shadow domain profile. 128 210 IPR000953 -
Glsi10g0650 1467 Gene3D - 1068 1248 - -
Glsi10g0650 1467 ProSiteProfiles Rubredoxin-like domain profile. 89 133 IPR024934 GO:0005506
Glsi10g0650 1467 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 640 801 IPR001650 -
Glsi10g0650 1467 CDD CD1_tandem 126 200 - -
Glsi10g0650 1467 Pfam SNF2-related domain 333 614 IPR000330 GO:0005524|GO:0140658
Glsi10g0650 1467 SMART chromo_7 218 272 IPR000953 -
Glsi10g0650 1467 SMART chromo_7 127 196 IPR000953 -
Glsi10g0650 1467 CDD CD2_tandem 218 267 - -
Glsi10g0650 1467 SMART DUF1086_2 941 1101 IPR009462 GO:0003677|GO:0006338
Glsi10g0650 1467 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 326 512 IPR014001 -
Glsi10g0650 1467 Gene3D - 128 203 - -
Glsi10g0650 1467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 127 IPR013083 -
Glsi10g0650 1467 Pfam PHD-finger 82 124 IPR019787 -
Glsi10g0650 1467 SUPERFAMILY Chromo domain-like 94 205 IPR016197 -
Glsi10g0650 1467 MobiDBLite consensus disorder prediction 1172 1190 - -
Glsi10g0650 1467 SMART helicmild6 666 750 IPR001650 -
Glsi10g0650 1467 Pfam Chromo (CHRromatin Organisation MOdifier) domain 130 185 IPR023780 -
Glsi10g0650 1467 Pfam Chromo (CHRromatin Organisation MOdifier) domain 221 269 IPR023780 -
Glsi10g0650 1467 MobiDBLite consensus disorder prediction 938 953 - -
Glsi10g0650 1467 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 57 1379 - -
Glsi10g0650 1467 MobiDBLite consensus disorder prediction 938 983 - -
Glsi10g0650 1467 MobiDBLite consensus disorder prediction 1401 1435 - -
Glsi10g0650 1467 SUPERFAMILY Chromo domain-like 212 270 IPR016197 -
Glsi10g0650 1467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 547 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0650 Glsi-ChrGlsi10 4099443 4121111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0650 336 811 RAD5 or RAD16-like Gene Family AT1G02670 23.792 1.73e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi10g0650 SNF2_N 2.2e-65 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0650 10 4099443 4121111 Glsi08g1646 08 11661187 11691441 CCT