Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0648 ATGGCAAAGTGTCACCGGAACAACGTTGGTTCTCTGGTTCTCGACCATCACGATCCTACCGGGAATGGTACCGTCAATGGCCACTTCCGTCTATGGAATACCTTGTCTGCTTCCTCATTTCGCCGCATCATTTTTGACGCCGTCAGCTGCGGCGGTAGCTCTCGTTATCACCACCGCCACCACAACGACTTCAGCTCTACCGCCTCAACGACGAGATCAGCCTCTAGCTCTAGGAACTCGAAGGATAAGTCGCTGGAACAGAGGCAGGAAGCTTCCAAGTCTCAGCCGAAATCGAATGCGAGGTCGGAGAAACTATCGGATCTTCTGAATATAGCCGAGTCTGAGATTGACGCCGAAACGAAGAAAAAGGAAGAGTCCTTGGAGGAGCTGAAGAAAATTGTGAAGGAGTTGCAGGGTGAGGATTTGACGAAGCGGCAAATGGCTGCGGCCACCATGAGATTGCTTGCGAAGGAAGACTTGGTAGTCAGAGGGACACTCGCTATGCTTGGAGCGATTCCTCCTCTGGTGGGGATGCTTGATTTGGACGACGTTAATTCTCAGATCTCTTGCCTATATGCGTTACTCAATCTCGGGATCGGCAACGATGCAAATAAAGCAGCCATTGTCAAAGTTGGTGCTGTTCACAAGATGCTAAAGCTCATTGAATCACCAACTGCTCCAGATTCATCAGTCTCTGAAGCAATTGTTGCCAATTTCCTTGGCTTAAGTGCTTTGGATTCGAATAAACCAATAATTGGATCCTCGGGTGCAATACCATTCCTGGTTAGAACCCTTGAAAATTTAGATAATAAAAGTAGCTCCCAAGCTAAGCAAGATGCTCTCCGAGCACTATACAATCTTTCAATCTTTCCAACCAACATCTCATTCATATTGGAAACCGATTTGGTTCCGTTTCTAATAAACGCAATAGGAGACATGGAAGTAAGTGAAAGAATCCTCTCAATCCTAAGCAATTTGGTATCGACTCCAGAGGGTCGAAAAGCTATCAGTGCGGTGCCAGATGCATTCCCAATTCTGATTGATGTATTGAATTGGACAGATTCAGCTGGTTGCCAAGAAAAAACATCGTACATTTTGATGATTATGGCACATAAAGCCTATGGTGACAGGCAGGCCATGATTGAGGCGGGGATTGTATCATCACTGCTTGAGTTGATGCTTCTGGGTACCGCATTGGCACAGAAAAGGGCTTCAAGGATATTGGAATGCTTGAGGATAGACAAAGGGAAGCAGGTATCTGGGAGTTACGGTGGAAACTTTAGCTCAACTATTTCTGCTCCTATATGTGGCTCTTCATCATCTTGTACGAAGCCATTTGGAGGTGGAAAAGAGTGTTTGGAGGAGGAGGAAGATATGATGAGTGACGAGAAGAAAGCAGTGAAGCAATTAGTCCAGCAGAGTTTGCAAAACAACATGAAGAAAATTGTGAAGAGGGCCAACTTGCCCCAGGATTTCGTTCCATCCGAGCATTTTAAGTCACTGACTTCAAGTTCGACTTCAAAGAGCCTGCCATTTTGA 1539 0.46 MAKCHRNNVGSLVLDHHDPTGNGTVNGHFRLWNTLSASSFRRIIFDAVSCGGSSRYHHRHHNDFSSTASTTRSASSSRNSKDKSLEQRQEASKSQPKSNARSEKLSDLLNIAESEIDAETKKKEESLEELKKIVKELQGEDLTKRQMAAATMRLLAKEDLVVRGTLAMLGAIPPLVGMLDLDDVNSQISCLYALLNLGIGNDANKAAIVKVGAVHKMLKLIESPTAPDSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLENLDNKSSSQAKQDALRALYNLSIFPTNISFILETDLVPFLINAIGDMEVSERILSILSNLVSTPEGRKAISAVPDAFPILIDVLNWTDSAGCQEKTSYILMIMAHKAYGDRQAMIEAGIVSSLLELMLLGTALAQKRASRILECLRIDKGKQVSGSYGGNFSSTISAPICGSSSSCTKPFGGGKECLEEEEDMMSDEKKAVKQLVQQSLQNNMKKIVKRANLPQDFVPSEHFKSLTSSSTSKSLPF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0648 512 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 25 512 - -
Glsi10g0648 512 Coils Coil 450 473 - -
Glsi10g0648 512 MobiDBLite consensus disorder prediction 1 26 - -
Glsi10g0648 512 MobiDBLite consensus disorder prediction 57 104 - -
Glsi10g0648 512 Gene3D - 312 480 IPR011989 -
Glsi10g0648 512 SMART arm_5 372 413 IPR000225 GO:0005515
Glsi10g0648 512 SMART arm_5 245 289 IPR000225 GO:0005515
Glsi10g0648 512 SMART arm_5 201 244 IPR000225 GO:0005515
Glsi10g0648 512 SMART arm_5 290 328 IPR000225 GO:0005515
Glsi10g0648 512 SMART arm_5 158 199 IPR000225 GO:0005515
Glsi10g0648 512 Coils Coil 102 140 - -
Glsi10g0648 512 Gene3D - 127 311 IPR011989 -
Glsi10g0648 512 SUPERFAMILY ARM repeat 129 414 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0648 Glsi-ChrGlsi10 4079726 4081749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0648 119 412 U-box Gene Family AT2G23140 32.432 1.13e-30 124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0648 10 4079726 4081749 Glsi08g1650 08 11715422 11717475 CCT