Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0623 ATGCTCGTGCGCGCCAGCGAGGGGCAGAGAGGCCCTGCCGGGCAAATAGGAATGGGAACATATCTGAGCACTCCCAAAACTGAAAAGTTTTCTGAAGATGGTGAGAATGACCATCTTAGATATGGTTTATCATCCATGCAAGGGTGGCGTGCAACAATGGAAGATGCTCATGCTGCATATCCTGATCTCGATGAGTCCACTTCATTTTTTGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCTAAGTATCTTCACCAACAGGTGCTCAAGAGTGAACCATATACATCTGGAGATATAGGAACCTCTCTTCAGAAAGCTTTTTTCAGAATGGATGAGATGATGCGTGGTCAAAGGGGATGGAGGGAATTAGCTGTATTGGGGGATAAAATAAACAAGTTTACTGGGATGATAGAAGGATTGATTTGGTCTCCACGAAGCAGTGATGGTAATGATCAGATTGATGATTGGGCATTTGAGGAGGGACCTCATTCTGATTTTGCTGGACCAACTTCAGGAAGCACTGCCTGTGTTGCAATAATTAGAAACAACCAACTTGTTGTTGCAAATGCTGGGGATTCACGCTGTGTGATATCTAGGAGGGGTCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGAGATTGAGAAGGAAAGAATCTTAAAAGCTGGTGGTTTTATTCATGCAGGGCGAGTTAATGGCAGTTTAAATCTTGCAAGGGCTATAGGTGACATGGAATTTAAACAGAATAAATTTCTGCCTGCTGAAAAACAAATTGTGACTGCCAATCCAGATATAAACACTGTTGAGCTTTGTGATGAAGATGAATTTATGGTGCTAGCATGTGATGGCATATGGGATTGCATGTCAAGCCAGCAATTGGTAGATTATGTGCATGAACAACTGCACTCGATAACAAAACTTTCTACGGTGTGTGAAAGAGTACTTGATCGGTGTTTGGCACCATCAACTCTTGGTGGCGAGGGATGTGATAACATGACAATGATCTTGGTGCAGTTCAAGAAACCCGCCCGGTCCTCTGGACTAGCAGCAGTAGAGCAATCCTCTTCAAATGAACAAGCTGAATCCGAACTGAAACTGGGGAAAAGTCAAATTTAG 1137 0.4327 MLVRASEGQRGPAGQIGMGTYLSTPKTEKFSEDGENDHLRYGLSSMQGWRATMEDAHAAYPDLDESTSFFGVYDGHGGKVVAKFCAKYLHQQVLKSEPYTSGDIGTSLQKAFFRMDEMMRGQRGWRELAVLGDKINKFTGMIEGLIWSPRSSDGNDQIDDWAFEEGPHSDFAGPTSGSTACVAIIRNNQLVVANAGDSRCVISRRGQAYNLSRDHKPDLEIEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIVTANPDINTVELCDEDEFMVLACDGIWDCMSSQQLVDYVHEQLHSITKLSTVCERVLDRCLAPSTLGGEGCDNMTMILVQFKKPARSSGLAAVEQSSSNEQAESELKLGKSQI 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0623 378 Gene3D - 17 347 IPR036457 -
Glsi10g0623 378 ProSitePatterns PPM-type phosphatase domain signature. 69 77 IPR000222 GO:0043169
Glsi10g0623 378 Pfam Protein phosphatase 2C 158 329 IPR001932 -
Glsi10g0623 378 Pfam Protein phosphatase 2C 40 120 IPR001932 -
Glsi10g0623 378 ProSiteProfiles PPM-type phosphatase domain profile. 40 346 IPR001932 -
Glsi10g0623 378 MobiDBLite consensus disorder prediction 1 22 - -
Glsi10g0623 378 PANTHER PROTEIN PHOSPHATASE 2C 32 345 IPR015655 GO:0004722|GO:0006470
Glsi10g0623 378 SMART PP2C_SIG_2 45 346 IPR001932 -
Glsi10g0623 378 SMART PP2C_4 29 344 IPR001932 -
Glsi10g0623 378 MobiDBLite consensus disorder prediction 355 378 - -
Glsi10g0623 378 SUPERFAMILY PP2C-like 20 348 IPR036457 -
Glsi10g0623 378 CDD PP2Cc 40 346 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0623 Glsi-ChrGlsi10 3922359 3929637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0623 18 352 PP2C-type Phosphatase Gene Family AT2G25070 80.000 0.0 591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0623 10 3922359 3929637 Glsi10g0623 10 3922359 3929637 ECH