Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0600 ATGCTGTTACCTCAATCGCTAATAATTTCCAACGACCAATGTGACATCACCAACCAGGCAAAGGCAGATATGAAAGCCAAGTGTCGGGAAGGAAGCGTCCCAGATGGCAATTCAAATTGTATTGAAATTGAAGGCGTATCATACTTACATGGAAGTCATCTTCGCCTAACAGATTGCAGGAGGCTTAGAACTCTGGCTTTTGAAGGATGTATGAAAGAAATTGGATGTAATCAGGGTGTTTTGATGGGTTGCGAGATGGAACATGACTCAATTGAGGACATGGACATTGAAGTGCTGCCTTCAATGTGGCCCGAAGATATTGGAACTGATGTTGGAAAACAATTCAACATAGAGAAGCCTGGAAGTGAGCAAGATATGTTGGAGGAGGTTACAATAATAGAGGAGCCAACTATAGTTGATTTCAAGCGCCTCATGGAACTTACGAATTATACAGACAAAGGGTCATCTCAGTTGACGTACCTTATGAAACATTGGGAGTATAAGCATGCTAATGCTGTGCGTCTTCTCAGAGAAGAACTGGACCACCTAAGTAAACAGAGGCAGGAAGCTGAGCTCAGGAAGTTGGAGATATTGGAAGAGCATCGATTTGAGGAAGAAAGATATGGTGGTGATAAACGTCCCATTTCCATCTTGGATGAAGTTTATGACATATGGCAAGATGTGCCACGCAGGAAAAGCGATATAGTTGTTCAAAACAGAGGAATTGAAATAGATGCTGAATATGATACTGTAGTATACTGGAAACAGCGGGTCCTGCATTTGGAAAAGCTGTTGGACGCAAGTATACAGAGAGAGCATATACTTATGGAGAAGTTGCAAGAAAGTGTAAAGAATCTTGAAAGGCAGTCCTCACCTGTGGAAGAACTGTCCCAGATTCTGAAAAGGGCAGATAACTTCTTACATTTCATTCTCCAGAATGCACCTGTTGTCATAGGCCATCAGGACAAAGAGCTGCGCTATCGCTTCATTTATAACCATTTCCCAAGTTTGCAAGGGGAGGATATCATAGGAAGAACAGATGTGGAAATTTTCACGGGATCTGGTGTTAGGGAATCTCAAGATTTTAAGAGAGAAGTTCTGGAAAAAGGATTACCTGCAAAAAGGGAAATTACTTTTGAGACAGAATTATTTGGGTCAAAGACATTCTTAATTTATGTAGAACCTGTGTTTAGCAAGGCAGGGGAGACAATTGGTATAAATTATATGGGAATGGATGTAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGCTTAGGGAAGAGATTGCAGTTCAGAAAGCCAAGGAATCAGAACTAAATAAAAGCATTCACATTACAGAGGAGACAATGCGTGCAAAACAAATGCTGGCAACCATGTCTCATGAGATAAGATCTCCACTGTCTGGGGTTGTTGGCATGGCTGAAATTCTTTCAACCACAAAACTTGATCGGGAGCAAAGACAACTCTTGGAAGTGATGCTTTCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTAGACCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTGGAAGCTACCAAATTCCGTCCAAGAGAGGTAGTAAAGCATGTACTCCAGACTGCTGCAGCATCATTGCAGAAAATGTTAACCTTAGAAGGTCATGTGGCAGATGATGTACCTATTGAGGTCATTGGAGATGTTCTAAGGATTCGGCAAATTCTCACAAATTTAGTCAGCAATGCAATCAAGTTTACCCATGAAGGGAAAGTTGGGATAAATCTATACGTAGTAGCAGAGCCATGTTTTGCAAAGTCCGAAGAAAGCCTCCACAAGATGAGTGCAGACAAGCCGAATGTTACAGCGGAAGCACTGACAGAAGAGAAATATGTGTCAACGTCTCAAAGTGGGAGTGAACAAAATCATGCTGACCGTCCCACCCAAAATCATGCATTCAGTGACGAATGTAGATCTCCGGTGAAAAGCGAATGCTCGAGGAATGGAGATACTGAGGAGCAACTTCATTCCACTGAAACAACAGCGTGGATACGTTGTGACGTTTATGACACAGGAATTGGAATACCAGAAAATGCAATACCTACTTTATTTAAAAGGTACATGCAAGTGAGTGCGGACCACGCTCGAAAGTATGGTGGCACAGGGCTAGGACTAGCTATATGCAAACAACTGGTTGAGTTAATGGGGGGTCGTCTAACGGTGTCTAGCAAAGAACACTGTGGTTCTACATTTACTTTCATACTGCCATACAAGGTTTCTACAGATTGTGATCATTCGGACGACCCCGACGAGCTCTCAGATGTGGAAAATAACGATGCTGTATCTGATGATACGACAGAGGGTTTCTTCCAATTCCAACCACGCACTTTGGGCTCTCTGTTTTCTTCCAATGGATCTAGCAAAACCCAAAAGTTATTACCGCATAAATTTGGGTATACAGGTTCACATAAATTTAATGGGTTTTTGGAGAATTCTTACTTATTCCCCTCTAGCAACATCAGATCAAAAGGGACAACTTCAGTTGAGGATACATCCTCAGTGGTTGATGCGCCGGAGATATCTGAATCAGGAAGTTCATCAAGTCACAACCCAGAAACGGAGAAGGAAAACGTAGTTGGCAGAGACAAACAGAGTCATGATAAGACATATGCTCAGTCCCAAAATGGTAGTGCTGATTATTCTCATCATATGGAGGCAAGTAGAGAAATTGCTGCAGCAACAAAGTCAAGCGAACCCCCGCAAACAAGACAGACTCAAACCCAAGAGAAGGATAACAGAACCTCCCAATGTGTAAGCAGCAGCAGTACATCAGCAGTAAGCAAATCCACATTGGAGCCTAAGATCCTTCTGGTTGAAGATAACAAGATCAATGTCATGGTGACACAGTCCATGATGAAGCAGTTAGGTCATAGTATTGATGTGGTGAATAATGGAGTGGAAGCTGTGCGCGCAGTTCAGCGCCGGAGTTATGACCTCACTTTAATGGATGTATGCATGCCAGTTATGAATGGTCTTCAAGCAACAAAACTGATTCGCTCTTTTGAGGAAACTGGCAATTGGGATGCTGCTATAAAAGCTGGAATTGAGCAAAGTCTACCAACTCTAGATTTGCAGAAAAGTGAATGTTGTCTACCTTCCACAAAGCGGATGCCCATTATCGCGATGACGGCAAATGCTTTGTCAGAGAGTGCCGAAGAGTGTTACGCAAATGGTATGGATTCATTTGTGTCGAAACCTGTGACTTTCCAAAAATTGAAGGAGTGTCTTGAACGATACCTGCGGTGA 3294 0.4235 MLLPQSLIISNDQCDITNQAKADMKAKCREGSVPDGNSNCIEIEGVSYLHGSHLRLTDCRRLRTLAFEGCMKEIGCNQGVLMGCEMEHDSIEDMDIEVLPSMWPEDIGTDVGKQFNIEKPGSEQDMLEEVTIIEEPTIVDFKRLMELTNYTDKGSSQLTYLMKHWEYKHANAVRLLREELDHLSKQRQEAELRKLEILEEHRFEEERYGGDKRPISILDEVYDIWQDVPRRKSDIVVQNRGIEIDAEYDTVVYWKQRVLHLEKLLDASIQREHILMEKLQESVKNLERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQGEDIIGRTDVEIFTGSGVRESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKRERMAKLREEIAVQKAKESELNKSIHITEETMRAKQMLATMSHEIRSPLSGVVGMAEILSTTKLDREQRQLLEVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGHVADDVPIEVIGDVLRIRQILTNLVSNAIKFTHEGKVGINLYVVAEPCFAKSEESLHKMSADKPNVTAEALTEEKYVSTSQSGSEQNHADRPTQNHAFSDECRSPVKSECSRNGDTEEQLHSTETTAWIRCDVYDTGIGIPENAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSTDCDHSDDPDELSDVENNDAVSDDTTEGFFQFQPRTLGSLFSSNGSSKTQKLLPHKFGYTGSHKFNGFLENSYLFPSSNIRSKGTTSVEDTSSVVDAPEISESGSSSSHNPETEKENVVGRDKQSHDKTYAQSQNGSADYSHHMEASREIAAATKSSEPPQTRQTQTQEKDNRTSQCVSSSSTSAVSKSTLEPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGVEAVRAVQRRSYDLTLMDVCMPVMNGLQATKLIRSFEETGNWDAAIKAGIEQSLPTLDLQKSECCLPSTKRMPIIAMTANALSESAEECYANGMDSFVSKPVTFQKLKECLERYLR 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0600 1097 MobiDBLite consensus disorder prediction 835 941 - -
Glsi10g0600 1097 Pfam Response regulator receiver domain 951 1018 IPR001789 GO:0000160
Glsi10g0600 1097 FunFam Histidine kinase 5 943 1097 - -
Glsi10g0600 1097 MobiDBLite consensus disorder prediction 910 941 - -
Glsi10g0600 1097 Coils Coil 423 443 - -
Glsi10g0600 1097 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 563 753 IPR003594 -
Glsi10g0600 1097 MobiDBLite consensus disorder prediction 623 644 - -
Glsi10g0600 1097 Pfam His Kinase A (phospho-acceptor) domain 454 517 IPR003661 GO:0000155|GO:0007165
Glsi10g0600 1097 Gene3D PAS domain 294 429 - -
Glsi10g0600 1097 Gene3D - 518 760 IPR036890 -
Glsi10g0600 1097 MobiDBLite consensus disorder prediction 645 670 - -
Glsi10g0600 1097 SMART HKATPase_4 563 755 IPR003594 -
Glsi10g0600 1097 FunFam Putative histidine kinase 5 440 517 - -
Glsi10g0600 1097 Gene3D - 941 1097 - -
Glsi10g0600 1097 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 91 1096 - -
Glsi10g0600 1097 CDD REC_hyHK_CKI1_RcsC-like 951 1092 - -
Glsi10g0600 1097 CDD HATPase_EvgS-ArcB-TorS-like 568 752 - -
Glsi10g0600 1097 ProSiteProfiles Response regulatory domain profile. 950 1096 IPR001789 GO:0000160
Glsi10g0600 1097 SMART REC_2 949 1092 IPR001789 GO:0000160
Glsi10g0600 1097 CDD HisKA 451 513 IPR003661 GO:0000155|GO:0007165
Glsi10g0600 1097 Coils Coil 173 200 - -
Glsi10g0600 1097 MobiDBLite consensus disorder prediction 870 884 - -
Glsi10g0600 1097 FunFam Histidine kinase 5 294 429 - -
Glsi10g0600 1097 Coils Coil 269 296 - -
Glsi10g0600 1097 MobiDBLite consensus disorder prediction 835 869 - -
Glsi10g0600 1097 SUPERFAMILY CheY-like 949 1097 IPR011006 -
Glsi10g0600 1097 SMART HisKA_10 452 517 IPR003661 GO:0000155|GO:0007165
Glsi10g0600 1097 Gene3D - 438 517 - -
Glsi10g0600 1097 ProSiteProfiles Histidine kinase domain profile. 459 755 IPR005467 -
Glsi10g0600 1097 PRINTS Bacterial sensor protein C-terminal signature 715 733 IPR004358 GO:0016310|GO:0016772
Glsi10g0600 1097 PRINTS Bacterial sensor protein C-terminal signature 739 752 IPR004358 GO:0016310|GO:0016772
Glsi10g0600 1097 PRINTS Bacterial sensor protein C-terminal signature 680 694 IPR004358 GO:0016310|GO:0016772
Glsi10g0600 1097 MobiDBLite consensus disorder prediction 623 672 - -
Glsi10g0600 1097 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 452 517 IPR036097 GO:0000155|GO:0007165
Glsi10g0600 1097 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 521 753 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0600 Glsi-ChrGlsi10 3761784 3769320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0600 82 1096 Histidine Kinase Gene Family AT5G10720 58.366 0.0 1146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi10g0600 HATPase_c 1.9e-27 CL0025