Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0589 ATGGATTCACCAGACCGGAACCAGAATCATAATTGTCTCAACCCGCCCTCCGATGACATAAACTCCAACCCTGACAGAGATGATTGTCCAATCCAGAAATCGCCGTCTTCCATAAAACCCGAGCGCATAGACCCTAGAAGGCATTTTTATTTGTTCCTTTATGGGCAGAAAGATCATAAAAATCGAGCCTTTTTTAATTGGTTTTCGAAGGGCATTGTTGCATATTCGCATTTATGCTTTTCGGGCTTTCTCTGTAGGTATCAATTAGGGGTGTTTGAAATAGCAAGGAGGAGGAACGCAATCGCAGTGTTGGATACCGGTTCCGGGAAGACCTTGATAGCTGTGATGCTCATAAAAGACGTTGGCCAAGCTATCAAGTCTAGTGGCGTAAAAAAGTTGATTATTTTCTTAGCTCCCACCGTACATCTTGTCAATCAGCAATTTAAGATTATAAAACGTCTTACAGATTTTGAAGTTGAAGAATACTATGGAGCTAAAGGAGTTGACACATGGAATTTAAACAGCTGGGAGAAGGAGTTTAGTGACCATGATGTATTGGTTATGACACCTCAGATTCTTTTGGATGCCTTGAGAAAGGCATTCCTGAGGATAGAGACAGTATGCTTGATTATTATTGATGAATGTCATAGAGCGACTGGCAACCACCCCTATGCAAAAATAATGAAGGAATTCTATCACAAAGCTAATGAAAAGCCAAAGATCTTTGGAATGACAGCATCACCGGTAATTAAAAAAGGTGCTTCCTCTACTATGGATTGCAAGGGTCAAATATCAGAACTTGAAATCATCTTAGACTCCCAAATATGTACAATTGAAGATAGGACAGAGATAGACGCTCATATCCCTTCTGCAAAAGAGAGCTGTAGATATTATGATCAAGCACGATTTCCTGCTATGAGTTTGAAACCAAAGATTGAAGCATTGTGGTCCACGTATGATGCTTTGTTGTCAGAATTACAAAGGTCAGTGCAGAGTAACTATAAAGATACAGATGATAAATTTAAGACCCTACATAAACGGATGTCCAATGAACTTGCAAAAACTTTGTATTGCCTTGAATATCTTGGACTTCTATGTGCTTATGAGGCTATCAAAATATCTCTTGAGAATTTCCCCAACACAGAGGGAGAGTGTGAAGCTTACAGAAAAGGTTCTCTGCATTGTAAATGTTTCTTTGAAAAAGTGATGCAAATAATTGGAGAATCTCTGCCTCTAGCTGATAAAAATCTTTTCGAGGTTGAATTTGATTATACAGAAGCAGAAAATTTGGGTTACATATCTCCAAAATTACATGAACTTATTCAAATCTTCCATTCATTTGGTGAATCTATCCAGGTGTTGTGCCTTATTTTCGTTGAGAGAATAGTGGCAGCTAAGGTGATTGAAAGGGTTGTGAAGAAAGTTTCCCACTTGTCTCATTTCACAGTTTCATATTTGACTGGAAGCAATACATCAATGGATTCACTGGCACCAAAGAAGCAGAAGGCAACGTTGGATTCATTTCGCTCTGGAAAGGTCAATCTATTATTTACTACTGATGTAGTTGAGGAAGGAATTCATGTGCCAAACTGCTCTTGTGTGATACGTTTTGACCTACCCAATACAGTTCGTAGTTATGTCCAATCTCGGGGACGAGCTAGGCAGACCAACTCCCAGTTTATTGTGATGTTGGAAAGGGGAAACTTGAAGCAAAGAAATCAACTGTTTGACATCATCAGGAGTGAGCGTTTCATGACTGATGCAGCTATCAGTAGAGGCCCTGGTGCTTCCTGTCTAAGGACTGTTACAGTAAAAGAAACAATTGCATACTCCGTGGATTCTACTGGAGCATCTGTAACTTCAGATTCTAGTGTTAGTCTTATACATCAATATTGTGAAAAGCTCTTAGGAGATAAGGACCTCAATACAAAGCCAATTTTTGAGTTTTTGGATACGGAAGGTGGTTGCAAGTGCAAATTATTATTGCCTCCTAATGCAGCTTTGCAAACAATAGTTGGTCCCTTAAGCAGAAATGCTCGTTTGGCAAAGCAACTTGCATGTTTAGAAGCTTGTAAGGAGCTCCATAATAGGGGTGCTTTAAATGATCATCTTCTCCCATCAGTTGAAGAGCCTCTGCACGACCATATTGTGAAAAGCAAAAAATCAATTGCAGGTGCAGGAACCACAAAAAGGAAGGAGTTACATGGCACAGCCAGCATTCGTGTATTATGTGGGACTTGGGGAGATAAACATGATGGAGCCCTATTTCATGCCTACAAATTTGATTTCACCTGTAATATTGTTAGTGAAATGTACTCTGGATTTGTTCTTTTGATTGAGTCAAAACTGGATGATGATGTGGGAAATGTTGAATTAGAACTTTACTTAATCTCAAAGATTGTGAAGACTTCAGTCTCATCATGTGGGCAAGTGCATTTGGATGCTGAACAGATGAAAAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTCTGTTTGGGAGATTATTTCTTTGGTCTAAAGAAGCAGGAGGAAAAAGAGAATTTTTACTTCAGAATGAGACAAAACCATTGTGGATCCCATCAAATTTGTATTTGCTTCTACCACTTGAGAAATTGAATGATATATGTAAGGGATCTCTGAAAATCAATTGGACAGGAATCAATTCTTGTGTTTCTGCTATTGAATTTATAAGCAAAAAGTTTTCTCTGGGTGCTGGACATTGTGATGATGACAAAAATAACTTATCACCTTGTGATACAAGTTCCTCAGAGGCTGAATGCGGTGGCACAAATAAGATTCATTTTGCTAACTGTGTAGTTGATGTTAACAATCTCAGTGATATGGTAGTTTTGGCCATTCACACTGGAAAAATATACTGTATAATTGAAGTTACTCATGACCTGTCTGCTGAAAGTCCTTTTGATGGAAGCAGAGAGAAATTGGCTGCAATGGAACATATAACCTTCTCTGATTATTTCAGCAGAAGGTATGGGATTACACTGAGACATCCAGCACAGCCTTTGTTGCGTGTGAGGCAAAGTCATAATCCACACAATCTTCTTGTGAACTTCAAGGAGGATGATACTCTGGACAAGGCATTGGAAAGTGGCGTGATAGTTCAAAAAGCTCGAGCTCATGTTCACATTCCACCTGAGCTTCTTTGTACTCTTGATGTTCGAAGAGATGTGTTAAAGTCTCTTTACTTACTTCCATCGCTGATGTACCGCCTTGAATCTTTAATGTTAGCCAGCCAACTTAGACAAGAGATAAATGGCCAAAATAACAACTTCAACATACCTAGCTTTTTGATTCTAGAAGCACTTACAACCTTACGATGTTGTGAAAAATTTTCAATGGAACGTCTTGAGTTACTTGGAGATTCTGTTCTGAAGTATGCTGTGAGCTGTCACCTTTTTCTTAAATATCCAAAAAAACATGAAGGGCAATTATCTTCCATACGCCAATTTGCTGTTTGTAATTCAACCCTGCATAAATTGGGAACAGATCACAAAATACAGGGGTATATCTGTGACTCTGCATTTGAGCCACGCCGTTGGGTTGCCCCAGGACAACGTTCTATACACACTGTTCCCTGTGAATGTGGGGTGGAAACCCTTGAAGTTCCTTTAGAGGAAAAGTTCCAGAGTGAAGATCCAAAAATTGTGGTTGGGAAGTTCTGTGACAGGCGCCACCGCTGGATATGTTCAAAGACTATTGCTGATTGTGTTGAAGCTCTGATAGGAGCATATTATGTGGGTGGTGGACTGATTGCTTCACTTCATGTGATGAAGTGGCTTGGAATTGATGCTGATCTTGAACCATCTTTGGTTGATGAAGCAATTACCACTGCATCTCTTCGCACATATGTGCCAAAAGGAAATGAGTTTGCAAGCCTTGAAACAAAAATTGGGTATAGATTTTCTGTTAAAGGACTCTTACAGGAGGCGACCACACATGCATCTGAGCAAGAACTTGGGGTTGGCTACTGTTATGAGAGGCTTGAATTTCTTGGCGACTCAGTATTGGACCTGCTTATCACATGGCATCTTTATCAGATCCACACAGATATTGATCCAGGGGAGTTGACTGAATTGCGTTCTGCTTCTGTCAGTAATGCAAATTTTGCTCAGGTTGCAGTCAGACAAAATCTTCAACCGCATCTTCTGCACTGCTCGGAGTTATTACTAAGCCAAATAACTGAATTTGTGAAGTTCATTTCTGATTTGAACAACACTACCAGGTCACTACCAGGCACTAAAGGTCCCAAGGCACTTGGAGATATAGTAGAAAGTATTGCAGGGGCTATACTAATTGACACAAAACTTAATCTTGATGAAGTGTGGAGAGTATTCAAACCTCTGTTATCTCCCATTGTTACTCCTGATAATCTTGAATTGCCACCTTTGCGTGAACTAATTGAACTATGCGACTCTCTTGGGTATTTTGTGAAAGAACAATGTAAAAAGAAGGGAGATATGGTGCATGCAGAGCTTACCGTACAGCTTCAAGATGTCCTGTTGATTCAAGAGGGACAGGGTTCAAATAGAAAAACAGCTAAAGGAGAAGCTGCTTTTCATTTGTTAAAGGAACTTGAGAAGAGGGGAATTTCATACCATAATTGTGGGTCCAAGAGAAGAAGAGATAATCCTGATCATTTTTTTGATTCGTCTTCTCTAACTGTGGATTTTAATATTTGCTCTGGTCTTCCTGATGAGCATTCCTCAGAGCCGGTAATGCTTAAAAGGGCCAAGGTGGACAAAACTAACATGCCGCCTAGTGCATCCAATGTTGCCATTCCAGTTATTACAACAATTAATATGAAGAAGGGAGGACCCCGGACCACCCTCTTTGACCTATGTAAAAGGCTGCAGTGGCCAATGCCTACGTTTGACTCAACAGAACATAAACAGAGGATGGCTTATGCTTTCTCTAGAGATGGTGCCATGCCACTCCCAAGCAAATAA 4968 0.399 MDSPDRNQNHNCLNPPSDDINSNPDRDDCPIQKSPSSIKPERIDPRRHFYLFLYGQKDHKNRAFFNWFSKGIVAYSHLCFSGFLCRYQLGVFEIARRRNAIAVLDTGSGKTLIAVMLIKDVGQAIKSSGVKKLIIFLAPTVHLVNQQFKIIKRLTDFEVEEYYGAKGVDTWNLNSWEKEFSDHDVLVMTPQILLDALRKAFLRIETVCLIIIDECHRATGNHPYAKIMKEFYHKANEKPKIFGMTASPVIKKGASSTMDCKGQISELEIILDSQICTIEDRTEIDAHIPSAKESCRYYDQARFPAMSLKPKIEALWSTYDALLSELQRSVQSNYKDTDDKFKTLHKRMSNELAKTLYCLEYLGLLCAYEAIKISLENFPNTEGECEAYRKGSLHCKCFFEKVMQIIGESLPLADKNLFEVEFDYTEAENLGYISPKLHELIQIFHSFGESIQVLCLIFVERIVAAKVIERVVKKVSHLSHFTVSYLTGSNTSMDSLAPKKQKATLDSFRSGKVNLLFTTDVVEEGIHVPNCSCVIRFDLPNTVRSYVQSRGRARQTNSQFIVMLERGNLKQRNQLFDIIRSERFMTDAAISRGPGASCLRTVTVKETIAYSVDSTGASVTSDSSVSLIHQYCEKLLGDKDLNTKPIFEFLDTEGGCKCKLLLPPNAALQTIVGPLSRNARLAKQLACLEACKELHNRGALNDHLLPSVEEPLHDHIVKSKKSIAGAGTTKRKELHGTASIRVLCGTWGDKHDGALFHAYKFDFTCNIVSEMYSGFVLLIESKLDDDVGNVELELYLISKIVKTSVSSCGQVHLDAEQMKKAKCFHELFFNGLFGRLFLWSKEAGGKREFLLQNETKPLWIPSNLYLLLPLEKLNDICKGSLKINWTGINSCVSAIEFISKKFSLGAGHCDDDKNNLSPCDTSSSEAECGGTNKIHFANCVVDVNNLSDMVVLAIHTGKIYCIIEVTHDLSAESPFDGSREKLAAMEHITFSDYFSRRYGITLRHPAQPLLRVRQSHNPHNLLVNFKEDDTLDKALESGVIVQKARAHVHIPPELLCTLDVRRDVLKSLYLLPSLMYRLESLMLASQLRQEINGQNNNFNIPSFLILEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSSIRQFAVCNSTLHKLGTDHKIQGYICDSAFEPRRWVAPGQRSIHTVPCECGVETLEVPLEEKFQSEDPKIVVGKFCDRRHRWICSKTIADCVEALIGAYYVGGGLIASLHVMKWLGIDADLEPSLVDEAITTASLRTYVPKGNEFASLETKIGYRFSVKGLLQEATTHASEQELGVGYCYERLEFLGDSVLDLLITWHLYQIHTDIDPGELTELRSASVSNANFAQVAVRQNLQPHLLHCSELLLSQITEFVKFISDLNNTTRSLPGTKGPKALGDIVESIAGAILIDTKLNLDEVWRVFKPLLSPIVTPDNLELPPLRELIELCDSLGYFVKEQCKKKGDMVHAELTVQLQDVLLIQEGQGSNRKTAKGEAAFHLLKELEKRGISYHNCGSKRRRDNPDHFFDSSSLTVDFNICSGLPDEHSSEPVMLKRAKVDKTNMPPSASNVAIPVITTINMKKGGPRTTLFDLCKRLQWPMPTFDSTEHKQRMAYAFSRDGAMPLPSK 1655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0589 1655 SUPERFAMILY RNase III domain-like 1078 1273 IPR036389 GO:0004525|GO:0006396
Glsi10g0589 1655 MobiDBLite consensus disorder prediction 1 20 - -
Glsi10g0589 1655 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 439 591 IPR001650 -
Glsi10g0589 1655 SMART helicmild6 469 556 IPR001650 -
Glsi10g0589 1655 FunFam Endoribonuclease dicer-like 1 1291 1463 - -
Glsi10g0589 1655 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 624 714 IPR005034 GO:0016891
Glsi10g0589 1655 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 91 248 IPR014001 -
Glsi10g0589 1655 ProSitePatterns Ribonuclease III family signature. 1333 1341 IPR000999 GO:0004525|GO:0006396
Glsi10g0589 1655 SUPERFAMILY PAZ domain 944 1055 IPR036085 GO:0005515
Glsi10g0589 1655 Gene3D paz domain 930 1057 - -
Glsi10g0589 1655 CDD RIBOc 1104 1267 IPR000999 GO:0004525|GO:0006396
Glsi10g0589 1655 Gene3D Dicer dimerisation domain 619 717 IPR038248 -
Glsi10g0589 1655 PANTHER DICER-RELATED 98 1541 - -
Glsi10g0589 1655 FunFam Dicer-like 104 934 1056 - -
Glsi10g0589 1655 Gene3D Ribonuclease III domain 1083 1267 IPR036389 GO:0004525|GO:0006396
Glsi10g0589 1655 Gene3D Ribonuclease III domain 1275 1462 IPR036389 GO:0004525|GO:0006396
Glsi10g0589 1655 Gene3D - 84 314 IPR027417 -
Glsi10g0589 1655 Pfam Type III restriction enzyme, res subunit 95 248 IPR006935 GO:0003677|GO:0005524|GO:0016787
Glsi10g0589 1655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 570 IPR027417 -
Glsi10g0589 1655 Gene3D - 427 588 IPR027417 -
Glsi10g0589 1655 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1511 1534 IPR014720 -
Glsi10g0589 1655 CDD DEXHc_dicer 86 280 - -
Glsi10g0589 1655 CDD SF2_C_dicer 432 564 - -
Glsi10g0589 1655 FunFam Dicer-like 104 1079 1268 - -
Glsi10g0589 1655 MobiDBLite consensus disorder prediction 1 37 - -
Glsi10g0589 1655 CDD RIBOc 1313 1465 IPR000999 GO:0004525|GO:0006396
Glsi10g0589 1655 ProSiteProfiles Ribonuclease III family domain profile. 1084 1256 IPR000999 GO:0004525|GO:0006396
Glsi10g0589 1655 FunFam Endoribonuclease dicer-like 1 427 590 - -
Glsi10g0589 1655 SUPERFAMILY RNase III domain-like 1297 1462 IPR036389 GO:0004525|GO:0006396
Glsi10g0589 1655 Pfam Ribonuclease III domain 1121 1255 IPR000999 GO:0004525|GO:0006396
Glsi10g0589 1655 Pfam Ribonuclease III domain 1333 1441 IPR000999 GO:0004525|GO:0006396
Glsi10g0589 1655 Pfam Dicer dimerisation domain 624 708 - -
Glsi10g0589 1655 ProSiteProfiles Ribonuclease III family domain profile. 1297 1442 IPR000999 GO:0004525|GO:0006396
Glsi10g0589 1655 SMART riboneu5 1312 1465 IPR000999 GO:0004525|GO:0006396
Glsi10g0589 1655 SMART riboneu5 1103 1276 IPR000999 GO:0004525|GO:0006396
Glsi10g0589 1655 FunFam Endoribonuclease dicer-like protein 82 318 - -
Glsi10g0589 1655 FunFam Endoribonuclease dicer-like 1 619 715 - -
Glsi10g0589 1655 Pfam PAZ domain 945 1080 IPR003100 GO:0005515
Glsi10g0589 1655 SMART ultradead3 80 284 IPR014001 -
Glsi10g0589 1655 Pfam Helicase conserved C-terminal domain 449 553 IPR001650 -
Glsi10g0589 1655 SMART PAZ_2_a_3 918 1083 IPR003100 GO:0005515
Glsi10g0589 1655 ProSiteProfiles PAZ domain profile. 945 1059 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0589 Glsi-ChrGlsi10 3682561 3696957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0589 473 553 Eukaryotic Initiation Factors Gene Family AT3G19760 37.931 7.34e-08 55.1